Expression profile across tissues

Tissue descriptions

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Tissue descriptions

Expression profile per tissue

Select dataset from the expression table below to display tissue-specific sncRNA information:





TissueDescriptionRead countRPM

A549_SRR446329A549 cell line16.00
0.79

A549_SRR446330A549 cell line26.00
1.07

A549_SRR446331A549 cell line12.00
0.25

A549_SRR446332A549 cell line10.00
0.18

AG04450_SRR446309AG04450 cell line -  Fetal lung fibroblast39.00
1.83

AG04450_SRR446310AG04450 cell line -  Fetal lung fibroblast21.00
0.96

BJ_SRR446315BJ cell line - Skin fibroblast5.00
0.56

BJ_SRR446316BJ cell line - Skin fibroblast13.00
0.57

CD14plus_SRR527681CD14plus_SRR52768132.00
2.43

CD14plus_SRR527682CD14plus_SRR5276824.00
0.83

CD20plus_SRR527679CD20plus_SRR5276790.00
0.00

CD20plus_SRR527680CD20plus_SRR5276802.00
0.40

CD34plus_SRR527586CD34plus_SRR5275865.00
0.10

GM12878_SRR446392"GM12878 cell line - B-lymphocyte /  lymphoblastoid / International HapMap Project"4.00
0.26

GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"3.00
0.15

H1-hESC_SRR446307male embryo H1-hESC stem cell3.00
0.12

H1-hESC_SRR446308male embryo H1-hESC stem cell4.00
0.17

H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells242.80
2.47

H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells288.50
2.56

HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell1.00
0.01

HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell2.00
0.03

HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell6.00
0.09

HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell21.00
0.28

HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell39.00
0.33

HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell36.33
0.40

HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell78.00
0.89

HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell0.00
0.00

HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell0.00
0.00

HOB_SRR527665male embryo (38 weeks) trophoblast tissue7.00
0.09

HOB_SRR527666male embryo (38 weeks) trophoblast tissue4.00
0.08

HPC-PL_SRR527691male newborn placental pericyte primary cell11.00
0.06

HPC-PL_SRR527692male newborn placental pericyte primary cell12.00
0.06

HPIEpC_SRR527696female newborn placental epithelial primary cell25.00
0.17

HPIEpC_SRR527697female newborn placental epithelial primary cell28.00
0.26

HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell14.00
0.09

HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell40.00
0.27

HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell3.00
0.04

HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell15.00
0.18

HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell7.00
0.04

HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell9.00
0.05

HeLa-S3_SRR446319HeLa-S3 cell line8.00
0.36

HeLa-S3_SRR446320HeLa-S3 cell line16.00
0.66

HepG2_SRR446333HepG2 cell line -  Hepatocellular carcinoma11.00
1.64

HepG2_SRR446334HepG2 cell line -  Hepatocellular carcinoma21.00
2.80

IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 27.00
0.30

IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 2.00
0.03

K562_SRR446398K562 cell line3.00
0.17

K562_SRR446399K562 cell line9.00
0.43

MCF-7_SRR446323MCF-7 cell line26.00
1.40

MCF-7_SRR446324MCF-7 cell line128.00
4.64

MCF-7_SRR446325MCF-7 cell line56.25
0.68

MCF-7_SRR446326MCF-7 cell line45.00
0.74

NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell3.00
0.04

NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell3.00
0.04

NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell13.00
0.88

NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell0.00
0.00

NHEM-M2_SRR527687Skin melanocytes primary whole cells 33.00
0.17

NHEM-M2_SRR527688Skin melanocytes primary whole cells 4.00
0.05

NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell11.00
0.07

NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell31.00
0.27

SK-N-SH-RA_SRR446303Neuroblastoma cell line28.08
1.50

SK-N-SH-RA_SRR446304Neuroblastoma cell line49.00
2.52

SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction -  Neuroblastoma0.00
0.00

SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction -  Neuroblastoma28.00
0.27

SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell1.00
0.01

SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell7.00
0.10

hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell1.00
0.01

hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell81.00
0.48

hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell0.00
0.00

hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell0.00
0.00

hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell15.00
0.11

hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell1.00
0.01



Note: To sort expression table by tissue name, raw expression, or RPM values click the corresponding column header.

Download expression table (CSV)




Expression: chr17:57215188:57215210:-:hsa-miR-454-5p | H1-neurons_SRR527651

Read count: 242.804

5p entropy: 1.46722(max=2)

3p entropy: 0(max=0)

Read coverage: chr17:57215188:57215210:-:hsa-miR-454-5p | H1-neurons_SRR527651



Show raw read coverage data (bedgraph)

Show raw plot data

Tissue specificity

TissueDescriptionTissue specificity
A549_SRR446329A549 cell line10.60
A549_SRR446330A549 cell line10.16
A549_SRR446331A549 cell line12.26
A549_SRR446332A549 cell line12.73
AG04450_SRR446309AG04450 cell line - Fetal lung fibroblast9.39
AG04450_SRR446310AG04450 cell line - Fetal lung fibroblast10.32
BJ_SRR446315BJ cell line - Skin fibroblast11.10
BJ_SRR446316BJ cell line - Skin fibroblast11.07
CD14plus_SRR527681CD14plus_SRR5276818.98
CD14plus_SRR527682CD14plus_SRR52768210.53
CD20plus_SRR527679CD20plus_SRR527679+inf
CD20plus_SRR527680CD20plus_SRR52768011.58
CD34plus_SRR527586CD34plus_SRR52758613.58
GM12878_SRR446392"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"12.20
GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"13.00
H1-hESC_SRR446307male embryo H1-hESC stem cell13.32
H1-hESC_SRR446308male embryo H1-hESC stem cell12.82
H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells8.95
H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells8.90
HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell16.90
HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell15.32
HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell13.73
HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell12.10
HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell11.86
HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell11.58
HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell10.43
HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell+inf
HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell+inf
HOB_SRR527665male embryo (38 weeks) trophoblast tissue13.73
HOB_SRR527666male embryo (38 weeks) trophoblast tissue13.90
HPC-PL_SRR527691male newborn placental pericyte primary cell14.32
HPC-PL_SRR527692male newborn placental pericyte primary cell14.32
HPIEpC_SRR527696female newborn placental epithelial primary cell12.82
HPIEpC_SRR527697female newborn placental epithelial primary cell12.20
HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell13.73
HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell12.15
HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell14.90
HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell12.73
HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell14.90
HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell14.58
HeLa-S3_SRR446319HeLa-S3 cell line11.73
HeLa-S3_SRR446320HeLa-S3 cell line10.86
HepG2_SRR446333HepG2 cell line - Hepatocellular carcinoma9.55
HepG2_SRR446334HepG2 cell line - Hepatocellular carcinoma8.77
IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 12.00
IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 15.32
K562_SRR446398K562 cell line12.82
K562_SRR446399K562 cell line11.48
MCF-7_SRR446323MCF-7 cell line9.77
MCF-7_SRR446324MCF-7 cell line8.04
MCF-7_SRR446325MCF-7 cell line10.82
MCF-7_SRR446326MCF-7 cell line10.69
NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell14.90
NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell14.90
NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell10.44
NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell+inf
NHEM-M2_SRR527687Skin melanocytes primary whole cells 12.82
NHEM-M2_SRR527688Skin melanocytes primary whole cells 14.58
NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell14.10
NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell12.15
SK-N-SH-RA_SRR446303Neuroblastoma cell line9.67
SK-N-SH-RA_SRR446304Neuroblastoma cell line8.93
SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction - Neuroblastoma+inf
SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction - Neuroblastoma12.15
SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell16.90
SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell13.58
hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell16.90
hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell11.32
hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell+inf
hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell+inf
hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell13.44
hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell16.90

Note: the tissue specificity (Q-score) < 7 generally indicates a tissue-specific sncRNA locus.

Note: To sort the table by tissue name or tissue-specificity scores, please click the corresponding column header.