Expression profile across tissues

Tissue descriptions

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Tissue descriptions

Expression profile per tissue

Select dataset from the expression table below to display tissue-specific sncRNA information:





TissueDescriptionRead countRPM

A549_SRR446329A549 cell line17852.60
875.90

A549_SRR446330A549 cell line18256.50
753.53

A549_SRR446331A549 cell line65397.70
1381.46

A549_SRR446332A549 cell line61602.40
1135.19

AG04450_SRR446309AG04450 cell line -  Fetal lung fibroblast57457.50
2697.84

AG04450_SRR446310AG04450 cell line -  Fetal lung fibroblast46347.90
2114.38

BJ_SRR446315BJ cell line - Skin fibroblast41249.80
4653.59

BJ_SRR446316BJ cell line - Skin fibroblast98714.80
4349.79

CD14plus_SRR527681CD14plus_SRR52768187488.20
6637.33

CD14plus_SRR527682CD14plus_SRR52768211039.80
2297.36

CD20plus_SRR527679CD20plus_SRR52767922864.90
8359.53

CD20plus_SRR527680CD20plus_SRR527680131747.00
26526.85

CD34plus_SRR527586CD34plus_SRR527586259752.00
5108.49

GM12878_SRR446392"GM12878 cell line - B-lymphocyte /  lymphoblastoid / International HapMap Project"9008.48
588.91

GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"13226.50
658.57

H1-hESC_SRR446307male embryo H1-hESC stem cell12723.90
526.47

H1-hESC_SRR446308male embryo H1-hESC stem cell10872.20
467.05

H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells1019360.00
10384.04

H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells787645.00
6996.59

HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell72886.10
1063.73

HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell90259.30
1486.19

HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell22978.10
356.64

HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell22693.10
307.86

HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell403395.00
3398.72

HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell171235.00
1864.92

HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell177668.00
2025.43

HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell193636.00
2057.91

HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell43249.20
1717.85

HOB_SRR527665male embryo (38 weeks) trophoblast tissue91560.50
1208.70

HOB_SRR527666male embryo (38 weeks) trophoblast tissue44029.20
895.31

HPC-PL_SRR527691male newborn placental pericyte primary cell60439.40
356.51

HPC-PL_SRR527692male newborn placental pericyte primary cell54836.90
287.64

HPIEpC_SRR527696female newborn placental epithelial primary cell76551.10
528.12

HPIEpC_SRR527697female newborn placental epithelial primary cell123058.00
1120.96

HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell53400.30
338.16

HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell70028.10
477.85

HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell48347.50
698.12

HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell71566.90
870.35

HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell54253.90
321.50

HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell82574.70
492.19

HeLa-S3_SRR446319HeLa-S3 cell line18804.80
843.15

HeLa-S3_SRR446320HeLa-S3 cell line36845.70
1515.66

HepG2_SRR446333HepG2 cell line -  Hepatocellular carcinoma30488.90
4544.38

HepG2_SRR446334HepG2 cell line -  Hepatocellular carcinoma35850.00
4786.09

IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 186640.00
2047.88

IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 168963.00
2297.42

K562_SRR446398K562 cell line4552.34
255.01

K562_SRR446399K562 cell line3886.29
186.36

MCF-7_SRR446323MCF-7 cell line15733.30
844.55

MCF-7_SRR446324MCF-7 cell line28238.30
1023.50

MCF-7_SRR446325MCF-7 cell line158653.00
1924.44

MCF-7_SRR446326MCF-7 cell line151884.00
2506.41

NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell60696.40
855.24

NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell63586.10
878.48

NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell34650.80
2340.24

NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell29748.40
2200.05

NHEM-M2_SRR527687Skin melanocytes primary whole cells 133252.00
679.53

NHEM-M2_SRR527688Skin melanocytes primary whole cells 37284.00
450.96

NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell86031.40
566.19

NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell56231.70
488.04

SK-N-SH-RA_SRR446303Neuroblastoma cell line49583.70
2641.48

SK-N-SH-RA_SRR446304Neuroblastoma cell line39970.10
2057.58

SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction -  Neuroblastoma211647.00
1907.91

SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction -  Neuroblastoma197263.00
1929.55

SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell25103.80
339.74

SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell27710.60
397.90

hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell230832.00
1414.14

hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell347820.00
2049.34

hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell214784.00
1155.34

hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell196155.00
831.89

hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell124383.00
901.10

hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell149686.00
855.18



Note: To sort expression table by tissue name, raw expression, or RPM values click the corresponding column header.

Download expression table (CSV)




Expression: chr3:37969412:37969434: :hsa-miR-26a-5p | H1-neurons_SRR527651

Read count: 1019360

5p entropy: 0.193059(max=3.16993)

3p entropy: 1.0666(max=3.16993)

Read coverage: chr3:37969412:37969434: :hsa-miR-26a-5p | H1-neurons_SRR527651



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Tissue specificity

TissueDescriptionTissue specificity
A549_SRR446329A549 cell line12.74
A549_SRR446330A549 cell line12.95
A549_SRR446331A549 cell line12.08
A549_SRR446332A549 cell line12.36
AG04450_SRR446309AG04450 cell line - Fetal lung fibroblast11.11
AG04450_SRR446310AG04450 cell line - Fetal lung fibroblast11.46
BJ_SRR446315BJ cell line - Skin fibroblast10.33
BJ_SRR446316BJ cell line - Skin fibroblast10.42
CD14plus_SRR527681CD14plus_SRR5276819.81
CD14plus_SRR527682CD14plus_SRR52768211.34
CD20plus_SRR527679CD20plus_SRR5276799.48
CD20plus_SRR527680CD20plus_SRR5276807.82
CD34plus_SRR527586CD34plus_SRR52758610.19
GM12878_SRR446392"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"13.31
GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"13.15
H1-hESC_SRR446307male embryo H1-hESC stem cell13.47
H1-hESC_SRR446308male embryo H1-hESC stem cell13.64
H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells9.17
H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells9.74
HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell12.46
HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell11.97
HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell14.03
HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell14.24
HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell10.78
HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell11.65
HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell11.53
HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell11.50
HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell11.76
HOB_SRR527665male embryo (38 weeks) trophoblast tissue12.27
HOB_SRR527666male embryo (38 weeks) trophoblast tissue12.70
HPC-PL_SRR527691male newborn placental pericyte primary cell14.03
HPC-PL_SRR527692male newborn placental pericyte primary cell14.34
HPIEpC_SRR527696female newborn placental epithelial primary cell13.47
HPIEpC_SRR527697female newborn placental epithelial primary cell12.38
HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell14.11
HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell13.61
HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell13.06
HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell12.74
HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell14.18
HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell13.57
HeLa-S3_SRR446319HeLa-S3 cell line12.79
HeLa-S3_SRR446320HeLa-S3 cell line11.94
HepG2_SRR446333HepG2 cell line - Hepatocellular carcinoma10.36
HepG2_SRR446334HepG2 cell line - Hepatocellular carcinoma10.29
IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 11.51
IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 11.34
K562_SRR446398K562 cell line14.52
K562_SRR446399K562 cell line14.97
MCF-7_SRR446323MCF-7 cell line12.79
MCF-7_SRR446324MCF-7 cell line12.51
MCF-7_SRR446325MCF-7 cell line11.60
MCF-7_SRR446326MCF-7 cell line11.22
NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell12.77
NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell12.73
NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell11.32
NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell11.41
NHEM-M2_SRR527687Skin melanocytes primary whole cells 13.10
NHEM-M2_SRR527688Skin melanocytes primary whole cells 13.69
NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell13.37
NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell13.58
SK-N-SH-RA_SRR446303Neuroblastoma cell line11.14
SK-N-SH-RA_SRR446304Neuroblastoma cell line11.50
SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction - Neuroblastoma11.61
SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction - Neuroblastoma11.60
SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell14.10
SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell13.87
hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell12.04
hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell11.51
hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell12.34
hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell12.81
hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell12.69
hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell12.77

Note: the tissue specificity (Q-score) < 7 generally indicates a tissue-specific sncRNA locus.

Note: To sort the table by tissue name or tissue-specificity scores, please click the corresponding column header.