Expression profile across tissues

Tissue descriptions

View plot in the new window

View heatmap
Download expression profile (CSV)

Read coverage profile across tissues

Tissue descriptions

Expression profile per tissue

Select dataset from the expression table below to display tissue-specific sncRNA information:





TissueDescriptionRead countRPM

A549_SRR446329A549 cell line138.98
6.82

A549_SRR446330A549 cell line252.30
10.41

A549_SRR446331A549 cell line75.00
1.58

A549_SRR446332A549 cell line71.50
1.32

AG04450_SRR446309AG04450 cell line -  Fetal lung fibroblast221.64
10.41

AG04450_SRR446310AG04450 cell line -  Fetal lung fibroblast116.91
5.33

BJ_SRR446315BJ cell line - Skin fibroblast49.00
5.53

BJ_SRR446316BJ cell line - Skin fibroblast125.85
5.55

CD14plus_SRR527681CD14plus_SRR527681465.95
35.35

CD14plus_SRR527682CD14plus_SRR52768246.50
9.68

CD20plus_SRR527679CD20plus_SRR52767918.00
6.58

CD20plus_SRR527680CD20plus_SRR527680122.08
24.58

CD34plus_SRR527586CD34plus_SRR52758615.00
0.30

GM12878_SRR446392"GM12878 cell line - B-lymphocyte /  lymphoblastoid / International HapMap Project"27.25
1.78

GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"41.06
2.04

H1-hESC_SRR446307male embryo H1-hESC stem cell20.00
0.83

H1-hESC_SRR446308male embryo H1-hESC stem cell21.33
0.92

H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells823.92
8.39

H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC -  Neurons derived from H1 embryonic stem cells649.42
5.77

HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell24.00
0.35

HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell24.00
0.40

HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell13.00
0.20

HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell9.00
0.12

HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell279.50
2.35

HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell125.00
1.36

HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell76.83
0.88

HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell243.69
2.59

HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell8.00
0.32

HOB_SRR527665male embryo (38 weeks) trophoblast tissue67.00
0.88

HOB_SRR527666male embryo (38 weeks) trophoblast tissue41.00
0.83

HPC-PL_SRR527691male newborn placental pericyte primary cell39.00
0.23

HPC-PL_SRR527692male newborn placental pericyte primary cell43.65
0.23

HPIEpC_SRR527696female newborn placental epithelial primary cell76.42
0.53

HPIEpC_SRR527697female newborn placental epithelial primary cell94.00
0.86

HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell57.00
0.36

HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell47.50
0.32

HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell22.00
0.32

HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell38.25
0.47

HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell86.50
0.51

HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell45.70
0.27

HeLa-S3_SRR446319HeLa-S3 cell line38.20
1.71

HeLa-S3_SRR446320HeLa-S3 cell line35.70
1.47

HepG2_SRR446333HepG2 cell line -  Hepatocellular carcinoma188.60
28.11

HepG2_SRR446334HepG2 cell line -  Hepatocellular carcinoma239.60
31.99

IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 76.20
0.84

IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 38.50
0.52

K562_SRR446398K562 cell line60.72
3.40

K562_SRR446399K562 cell line53.70
2.58

MCF-7_SRR446323MCF-7 cell line34.06
1.83

MCF-7_SRR446324MCF-7 cell line72.64
2.63

MCF-7_SRR446325MCF-7 cell line66.33
0.80

MCF-7_SRR446326MCF-7 cell line68.95
1.14

NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell37.00
0.52

NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell44.00
0.61

NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell64.82
4.38

NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell32.45
2.40

NHEM-M2_SRR527687Skin melanocytes primary whole cells 39.50
0.20

NHEM-M2_SRR527688Skin melanocytes primary whole cells 2.00
0.02

NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell28.00
0.18

NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell32.00
0.28

SK-N-SH-RA_SRR446303Neuroblastoma cell line169.00
9.00

SK-N-SH-RA_SRR446304Neuroblastoma cell line122.60
6.31

SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction -  Neuroblastoma150.00
1.35

SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction -  Neuroblastoma68.00
0.67

SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell24.00
0.32

SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell46.20
0.66

hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell181.40
1.11

hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell168.00
0.99

hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell66.20
0.36

hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell19.00
0.08

hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell70.50
0.51

hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell106.00
0.61



Note: To sort expression table by tissue name, raw expression, or RPM values click the corresponding column header.

Download expression table (CSV)




Expression: chr4:109488712:109488734: :hsa-miR-576-5p | H1-neurons_SRR527651

Read count: 823.917

5p entropy: 0.0446916(max=0)

3p entropy: 0.624649(max=2.58496)

Read coverage: chr4:109488712:109488734: :hsa-miR-576-5p | H1-neurons_SRR527651



Show raw read coverage data (bedgraph)

Show raw plot data

Tissue specificity

TissueDescriptionTissue specificity
A549_SRR446329A549 cell line10.00
A549_SRR446330A549 cell line9.39
A549_SRR446331A549 cell line12.11
A549_SRR446332A549 cell line12.37
AG04450_SRR446309AG04450 cell line - Fetal lung fibroblast9.39
AG04450_SRR446310AG04450 cell line - Fetal lung fibroblast10.36
BJ_SRR446315BJ cell line - Skin fibroblast10.30
BJ_SRR446316BJ cell line - Skin fibroblast10.30
CD14plus_SRR527681CD14plus_SRR5276817.63
CD14plus_SRR527682CD14plus_SRR5276829.50
CD20plus_SRR527679CD20plus_SRR52767910.05
CD20plus_SRR527680CD20plus_SRR5276808.15
CD34plus_SRR527586CD34plus_SRR52758614.51
GM12878_SRR446392"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"11.94
GM12878_SRR446393"GM12878 cell line - B-lymphocyte / lymphoblastoid / International HapMap Project"11.74
H1-hESC_SRR446307male embryo H1-hESC stem cell13.04
H1-hESC_SRR446308male embryo H1-hESC stem cell12.89
H1-neurons_SRR527651male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells9.70
H1-neurons_SRR527652male embryo neural in vitro differentiated cells originated from H1-hESC - Neurons derived from H1 embryonic stem cells10.24
HAoAF_SRR527663female adult (24 years) fibroblast of the aortic adventitia primary cell14.29
HAoAF_SRR527664female adult (24 years) fibroblast of the aortic adventitia primary cell14.09
HAoEC_SRR527673female adult (22 years) thoracic aorta endothelial primary cell15.09
HAoEC_SRR527674female adult (22 years) thoracic aorta endothelial primary cell15.83
HCH_SRR527667male adult (64 years) articular chondrocyte of knee joint primary cell11.54
HCH_SRR527668male adult (64 years) articular chondrocyte of knee joint primary cell12.33
HFDPC_SRR527669female adult (47 years) hair follicle dermal papilla primary cell12.96
HFDPC_SRR527670female adult (47 years) hair follicle dermal papilla primary cell11.40
HMEpC_SRR527693female adult (23 years) mammary epithelial primary cell14.42
HOB_SRR527665male embryo (38 weeks) trophoblast tissue12.96
HOB_SRR527666male embryo (38 weeks) trophoblast tissue13.04
HPC-PL_SRR527691male newborn placental pericyte primary cell14.89
HPC-PL_SRR527692male newborn placental pericyte primary cell14.89
HPIEpC_SRR527696female newborn placental epithelial primary cell13.69
HPIEpC_SRR527697female newborn placental epithelial primary cell12.99
HSaVEC_SRR527694male adult (52 years) vein endothelial primary cell14.25
HSaVEC_SRR527695male adult (52 years) vein endothelial primary cell14.42
HVMF_SRR527659female newborn fibroblast of villous mesenchyme primary cell14.42
HVMF_SRR527660female newborn fibroblast of villous mesenchyme primary cell13.86
HWP_SRR527685female adult (62 years) subcutaneous preadipocyte primary cell13.74
HWP_SRR527686female adult (62 years) subcutaneous preadipocyte primary cell14.66
HeLa-S3_SRR446319HeLa-S3 cell line12.00
HeLa-S3_SRR446320HeLa-S3 cell line12.22
HepG2_SRR446333HepG2 cell line - Hepatocellular carcinoma7.96
HepG2_SRR446334HepG2 cell line - Hepatocellular carcinoma7.77
IMR90_SRR527621IMR-90 cell line - fetal lung fibroblast 13.02
IMR90_SRR527622IMR-90 cell line - fetal lung fibroblast 13.72
K562_SRR446398K562 cell line11.01
K562_SRR446399K562 cell line11.40
MCF-7_SRR446323MCF-7 cell line11.90
MCF-7_SRR446324MCF-7 cell line11.38
MCF-7_SRR446325MCF-7 cell line13.09
MCF-7_SRR446326MCF-7 cell line12.58
NHDF_SRR527661female adult (55 years) fibroblast of dermis primary cell13.72
NHDF_SRR527662female adult (55 years) fibroblast of dermis primary cell13.48
NHEK_SRR446337female keratinocyte primary cell - female keratinocyte primary cell10.64
NHEK_SRR446338female keratinocyte primary cell - female keratinocyte primary cell11.51
NHEM-M2_SRR527687Skin melanocytes primary whole cells 15.09
NHEM-M2_SRR527688Skin melanocytes primary whole cells 18.42
NHEM-f-M2_SRR527683male child (3 years) melanocyte of skin primary cell15.25
NHEM-f-M2_SRR527684male child (3 years) melanocyte of skin primary cell14.61
SK-N-SH-RA_SRR446303Neuroblastoma cell line9.60
SK-N-SH-RA_SRR446304Neuroblastoma cell line10.11
SK-N-SH_SRR527595SK-N-SH cell line nuclear fraction - Neuroblastoma12.34
SK-N-SH_SRR527596SK-N-SH cell line nuclear fraction - Neuroblastoma13.35
SkMC_SRR527671male adult (21 year) skeletal muscle satellite primary cell14.42
SkMC_SRR527672male adult (21 year) skeletal muscle satellite primary cell13.37
hMSC-AT_SRR527675female adult (42 years) mesenchymal of adipose stem cell12.62
hMSC-AT_SRR527676female adult (42 years) mesenchymal of adipose stem cell12.79
hMSC-BM_SRR527649female adult (60 years) mesenchymal of the bone marrow stem cell14.25
hMSC-BM_SRR527650female adult (60 years) mesenchymal of the bone marrow stem cell16.42
hMSC-UC_SRR527689female newborn mesenchymal of Wharton's jelly stem cell13.74
hMSC-UC_SRR527690female newborn mesenchymal of Wharton's jelly stem cell13.48

Note: the tissue specificity (Q-score) < 7 generally indicates a tissue-specific sncRNA locus.

Note: To sort the table by tissue name or tissue-specificity scores, please click the corresponding column header.