Expression profile across tissues

Tissue descriptions

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Read coverage profile across tissues

Tissue descriptions

Expression profile per tissue

Select dataset from the expression table below to display tissue-specific sncRNA information:





TissueDescriptionRead countRPM

adipose1_GSE45159Adipose336.04
4.54

bcellgerminalcenter1_GSE22898Germinal center B cell452.08
107.12

bcellmemory1_GSE22898Memory B cell78.73
20.79

bcellnaive1_GSE22898Naive B Cell139.50
37.36

bcellplasma1_GSE22898Plasma B cell72.34
21.27

bladder1_GSE31616Bladder233.67
7.75

brainog1_SRA012516Orbital gyrus217.27
81.21

brainpfc1_GSE43335Dorsolateral prefrontal cortex47052.90
906.09

brainpfc2_GSE48552Prefrontal cortex3697.37
123.96

braintgm1_GSE46131Temporal neocortex gray matter97.65
10.36

breast1_GSE39162Breast186.81
11.45

cd4plustcell1_GSE59944CD4+ cell573.98
29.33

colon1_GSE46622Colon4330.73
40.83

colon2_GSE43550Colon956.83
17.60

colonascendens1_GSE46622Ascending colon2992.31
79.79

colonrectum1_GSE46622Rectum546.40
23.51

heart1_ERP000773Heart43.75
1.17

heart2_SRA012516Heart2.67
0.60

kidney1_ERP000773Kidney120.69
4.21

kidney2_GSE24457Kidney718.14
8.73

liver1_ERP000773Liver28.06
1.01

liver2_SRA012516Liver0.00
0.00

liver3_GSE21279Liver244.53
7.44

lung1_GSE33858Lung1116.28
8.80

lung2_SRA012516Lung16.28
3.59

monocytemacrophage1_GSE59944Monocyte-derived macrophage113.80
11.78

muscle1_SRA012516Muscle0.00
0.00

pancreas1_SRA012516Pancreas85.78
49.22

pancreaticbetacell1_GSE47720Pancreatic beta-cells176226.00
2333.03

pancreaticislet1_GSE47720Pancreatic islets40414.10
441.32

peripheralbmc1_GSE19812Peripheral blood mononuclear cells (PBMC)1414.00
369.39

peripheralbmc2_GSE37710Peripheral blood mononuclear cells (PBMC)342.56
35.08

plasma1_GSE52981Plasma9.00
0.40

serum1_GSE53439Serum3.33
0.41

serum2_GSE34891Serum101.78
7.35

skin1_GSE31037Skin1170.76
5.03

skin2_GSE53600Skin2711.61
83.13

spermatozoa1_GSE21191Spermatozoa5.05
0.26

spleen1_GSE49624Sperm659.95
56.19

testiculargerm1_GSE31616Testiculargerm3178.64
28.40

wholeblood1_GSE46579Whole blood25.03
0.08

wholeislet1_GSE52314Whole islet8193.14
1633.99



Note: To sort expression table by tissue name, raw expression, or RPM values click the corresponding column header.

Download expression table (CSV)




Expression: chr9:83969811:83969834:-:hsa-miR-7-5p | adipose1_GSE45159

Read count: 336.037

5p entropy: 2.31063(max=3.45943)

3p entropy: 2.11696(max=2.58496)

Read coverage: chr9:83969811:83969834:-:hsa-miR-7-5p | adipose1_GSE45159



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Tissue specificity

TissueDescriptionTissue specificity
adipose1_GSE45159Adipose13.41
bcellgerminalcenter1_GSE22898Germinal center B cell8.85
bcellmemory1_GSE22898Memory B cell11.22
bcellnaive1_GSE22898Naive B Cell10.37
bcellplasma1_GSE22898Plasma B cell11.19
bladder1_GSE31616Bladder12.64
brainog1_SRA012516Orbital gyrus9.25
brainpfc1_GSE43335Dorsolateral prefrontal cortex5.77
brainpfc2_GSE48552Prefrontal cortex8.64
braintgm1_GSE46131Temporal neocortex gray matter12.22
breast1_GSE39162Breast12.08
cd4plustcell1_GSE59944CD4+ cell10.72
colon1_GSE46622Colon10.24
colon2_GSE43550Colon11.46
colonascendens1_GSE46622Ascending colon9.28
colonrectum1_GSE46622Rectum11.04
heart1_ERP000773Heart15.37
heart2_SRA012516Heart16.33
kidney1_ERP000773Kidney13.52
kidney2_GSE24457Kidney12.47
liver1_ERP000773Liver15.58
liver2_SRA012516Liver+inf
liver3_GSE21279Liver12.70
lung1_GSE33858Lung12.46
lung2_SRA012516Lung13.75
monocytemacrophage1_GSE59944Monocyte-derived macrophage12.04
muscle1_SRA012516Muscle+inf
pancreas1_SRA012516Pancreas9.98
pancreaticbetacell1_GSE47720Pancreatic beta-cells4.41
pancreaticislet1_GSE47720Pancreatic islets6.81
peripheralbmc1_GSE19812Peripheral blood mononuclear cells (PBMC)7.07
peripheralbmc2_GSE37710Peripheral blood mononuclear cells (PBMC)10.46
plasma1_GSE52981Plasma16.92
serum1_GSE53439Serum16.88
serum2_GSE34891Serum12.72
skin1_GSE31037Skin13.27
skin2_GSE53600Skin9.22
spermatozoa1_GSE21191Spermatozoa17.54
spleen1_GSE49624Sperm9.78
testiculargerm1_GSE31616Testiculargerm10.77
wholeblood1_GSE46579Whole blood19.24
wholeislet1_GSE52314Whole islet4.92

Note: the tissue specificity (Q-score) < 7 generally indicates a tissue-specific sncRNA locus.

Note: To sort the table by tissue name or tissue-specificity scores, please click the corresponding column header.

RNA structure

RNA structure: SAVoR | adipose1_GSE45159