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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier	Data Source	Download file	Number of intervals	bp covered	Output type	Genome build	cell type	Biosample type	Biosamples term id	Tissue category	ENCODE Experiment id	Biological replicate(s)	Technical replicate	Antibody	Assay	File format	File size	Release date	Date added to FILER	Data Category	Genomic feature type	Track Description	system category	life stage	trackName
NGEN024838	ENCODE	Download	67,545	34,874,835	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR265ZXX	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	1,919,658	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 2) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR265ZXX] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN025307	ENCODE	Download	82,706	41,587,707	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR220ASC	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	2,285,714	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 3) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN026136	ENCODE	Download	85,595	45,775,054	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR139OYS	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	2,406,905	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 3) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR139OYS] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN029137	ENCODE	Download	79,213	44,309,553	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR139OYS	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,228,365	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 2) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR139OYS] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN030330	ENCODE	Download	77,204	41,822,828	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR074AHH	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	2,135,228	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 3) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR074AHH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN030341	ENCODE	Download	53,859	27,465,999	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR288YMH	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,521,048	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR288YMH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN030759	ENCODE	Download	73,440	41,459,242	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR074AHH	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,090,237	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 2) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR074AHH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN031438	ENCODE	Download	73,929	39,686,010	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR220ASC	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,095,343	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 2) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN032677	ENCODE	Download	61,005	33,862,603	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR139OYS	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,749,297	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR139OYS] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.01h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN033320	ENCODE	Download	71,579	36,596,055	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR074AHH	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,995,521	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR074AHH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.08h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN033499	ENCODE	Download	67,142	34,085,018	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR220ASC	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,880,873	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.00h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN034633	ENCODE	Download	71,915	38,984,407	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR265ZXX	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	2,035,201	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 3) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR265ZXX] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN034995	ENCODE	Download	91,123	44,914,902	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR288YMH	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	2,527,514	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 3) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR288YMH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep3.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN035281	ENCODE	Download	61,243	31,918,165	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR265ZXX	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,748,935	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR265ZXX] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.12h.rep1.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN035653	ENCODE	Download	86,623	45,175,895	peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR288YMH	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,403,620	4/23/18	7/15/20	Called peaks	ATAC-seq peaks	Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb	Respiratory	Unknown	ENCODE A549 (repl. 2) ATAC-seq peaks (narrowPeak) [Experiment: ENCSR288YMH] [Orig: Biosample_summary=A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=A549.atacseq.dex.04h.rep2.dedup.masked.sorted_peaks.trunked_scores.bb] [Life stage: Unknown]
NGEN035708	ENCODE	Download	79,849	74,929,362	IDR thresholded peaks	hg38	Naive thymus-derived CD8+, alpha-beta T cell	Primary cell	CL:0000900	Blood	ENCSR614JAG	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	1,767,946	10/13/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR614JAG] [Orig: Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult]
NGEN035709	ENCODE	Download	203,874	155,413,180	pseudoreplicated peaks	hg38	K562	Cell line	EFO:0002067	Blood	ENCSR483RKN	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	5,168,240	7/21/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=K562;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR483RKN] [Orig: Biosample_summary=K562;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035710	ENCODE	Download	152,879	106,720,320	pseudoreplicated peaks	hg38	HG03280	Cell line	EFO:0010875	Blood	ENCSR554WGQ	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,915,714	2/11/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=HG03280;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG03280 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR554WGQ] [Orig: Biosample_summary=HG03280;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035711	ENCODE	Download	269,964	206,211,666	pseudoreplicated peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR913OWV	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	6,734,554	8/24/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Unknown	ENCODE Lower motor neurons (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Orig: Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Unknown]
NGEN035712	ENCODE	Download	166,378	125,325,278	pseudoreplicated peaks	hg38	CD8+ alpha-beta naive T cell	Primary cell	NTR:0000667	Blood	ENCSR637OPZ	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	4,293,904	10/13/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE CD8+ alpha-beta naive T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR637OPZ] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-
NGEN035713	ENCODE	Download	117,112	85,860,743	pseudoreplicated peaks	hg38	DND-41	Cell line	EFO:0007074	Blood	ENCSR660WSB	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	3,021,875	4/6/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE DND-41 (repl. 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035714	ENCODE	Download	148,398	103,111,740	pseudoreplicated peaks	hg38	Gastroesophageal sphincter	Tissue	UBERON:0004550	Digestive	ENCSR670REK	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,866,476	6/15/16	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=musculature,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx	Digestive	Adult	ENCODE Gastroesophageal sphincter (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR670REK] [Orig: Biosample_summary=Gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=musculature,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx] [Life stage: Adult]
NGEN035715	ENCODE	Download	26,034	19,020,466	IDR thresholded peaks	hg38	Cerebellum	Tissue	UBERON:0002037	Brain	ENCSR802GEV	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	575,729	10/9/17	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Nervous	Adult	ENCODE Cerebellum (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802GEV] [Orig: Biosample_summary=Cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035716	ENCODE	Download	219,506	184,525,263	replicated peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR516YAD	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	5,465,723	8/24/21	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=Male adult (47 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR516YAD] [Orig: Biosample_summary=Male adult (47 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Adult]
NGEN035717	ENCODE	Download	153,851	155,389,980	IDR thresholded peaks	hg38	NCI-H929	Cell line	EFO:0001221	Immune	ENCSR382LBS	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,329,683	4/6/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Lymphatic	Unknown	ENCODE NCI-H929 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Orig: Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035718	ENCODE	Download	223,873	168,004,335	pseudoreplicated peaks	hg38	GM12878	Cell line	EFO:0002784	Blood	ENCSR095QNB	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	5,680,973	8/5/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Orig: Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035719	ENCODE	Download	130,088	120,798,460	conservative IDR thresholded peaks	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR042AWH	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	2,840,528	8/5/20	11/20/22	Called peaks	ATAC-seq conservative IDR thresholded peaks	Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE HepG2 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR042AWH] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035720	ENCODE	Download	262,519	249,220,398	pseudoreplicated peaks	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR291GJU	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	6,802,712	8/5/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE HepG2 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR291GJU] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035721	ENCODE	Download	114,880	73,973,138	pseudoreplicated peaks	hg38	CD8+ alpha-beta effector memory cell	Primary cell	NTR:0000668	Blood	ENCSR335XRZ	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,985,986	11/16/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;flag=unexp	Cardiovascular	Adult	ENCODE CD8+ alpha-beta effector memory cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR335XRZ] [Orig: Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.
NGEN035722	ENCODE	Download	138,840	125,550,376	IDR thresholded peaks	hg38	HG03354	Cell line	EFO:0010877	Blood	ENCSR025MEO	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,031,377	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=HG03354;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG03354 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR025MEO] [Orig: Biosample_summary=HG03354;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035723	ENCODE	Download	110,632	81,640,572	pseudoreplicated peaks	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR220ASC	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,830,812	4/23/18	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Respiratory	Unknown	ENCODE A549 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035724	ENCODE	Download	201,930	138,906,015	pseudoreplicated peaks	hg38	HG02885	Cell line	EFO:0010854	Blood	ENCSR621JYI	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	5,076,603	2/11/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=HG02885;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG02885 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR621JYI] [Orig: Biosample_summary=HG02885;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035725	ENCODE	Download	76,833	69,558,135	IDR thresholded peaks	hg38	DND-41	Cell line	EFO:0007074	Blood	ENCSR660WSB	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	1,720,240	4/6/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE DND-41 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035726	ENCODE	Download	75,496	58,717,549	IDR thresholded peaks	hg38	Natural killer cell	Primary cell	CL:0000623	Blood	ENCSR305QTE	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	1,707,554	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Adult	ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR305QTE] [Orig: Biosample_summary=Natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035727	ENCODE	Download	86,706	57,489,871	IDR thresholded peaks	hg38	Dendritic cell	In vitro differentiated cells	CL:0000451	Blood	ENCSR535NOD	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,018,175	1/19/17	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535NOD] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035728	ENCODE	Download	227,244	172,363,505	pseudoreplicated peaks	hg38	Right ventricle	Tissue	UBERON:0002080	Heart	ENCSR522FGI	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	5,905,009	8/17/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle	Cardiovascular	Adult	ENCODE Right ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR522FGI] [Orig: Biosample_summary=Heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle] [Life stage: Adult]
NGEN035729	ENCODE	Download	275,450	221,365,141	pseudoreplicated peaks	hg38	Mucosa	Tissue	UBERON:0000317	Digestive	ENCSR970UNF	2	2_1, 2_2	Not applicable	ATAC-seq	bed narrowPeak	7,418,909	8/20/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa	Digestive	Adult	ENCODE Mucosa (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa] [Life stage: Adult]
NGEN035730	ENCODE	Download	41,654	31,841,556	IDR thresholded peaks	hg38	Spleen	Tissue	UBERON:0002106	Immune Organ	ENCSR694OWY	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	901,970	6/16/22	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Lymphatic	Adult	ENCODE Spleen (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR694OWY] [Orig: Biosample_summary=Spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035731	ENCODE	Download	94,684	90,632,231	IDR thresholded peaks	hg38	Naive thymus-derived CD4+, alpha-beta T cell	Primary cell	CL:0000895	Blood	ENCSR260LAN	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	2,083,888	6/8/22	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR260LAN] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult]
NGEN035732	ENCODE	Download	213,373	151,096,752	pseudoreplicated peaks	hg38	Psoas muscle	Tissue	UBERON:0008450	Skeletal Muscle	ENCSR886VCC	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	5,673,461	8/17/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Muscular	Adult	ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR886VCC] [Orig: Biosample_summary=Psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035733	ENCODE	Download	74,075	43,103,749	pseudoreplicated peaks	hg38	Tibial nerve	Tissue	UBERON:0001323	Nervous	ENCSR831KAH	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,868,035	6/21/17	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=peripheral nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx	Nervous	Adult	ENCODE Tibial nerve (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR831KAH] [Orig: Biosample_summary=Tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=peripheral nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx] [Life stage: Adult]
NGEN035734	ENCODE	Download	88,684	65,262,163	pseudoreplicated peaks	hg38	CD8+ alpha-beta memory T cell	Primary cell	CL:0000907	Blood	ENCSR165FYY	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,304,202	6/8/22	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE CD8+ alpha-beta memory T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165FYY] [Orig: Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult]
NGEN035735	ENCODE	Download	162,285	119,614,429	pseudoreplicated peaks	hg38	GM19023	Cell line	EFO:0010835	Blood	ENCSR512FHU	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	4,043,043	2/11/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM19023 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR512FHU] [Orig: Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035736	ENCODE	Download	57,282	42,016,140	IDR thresholded peaks	hg38	HG03060	Cell line	EFO:0010863	Blood	ENCSR470ZNM	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,336,995	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=HG03060;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG03060 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR470ZNM] [Orig: Biosample_summary=HG03060;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035737	ENCODE	Download	93,340	79,558,599	IDR thresholded peaks	hg38	GM21360	Cell line	CLO:0015908	Blood	ENCSR105SCQ	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,086,459	2/10/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM21360;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM21360 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR105SCQ] [Orig: Biosample_summary=GM21360;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035738	ENCODE	Download	51,568	30,568,233	IDR thresholded peaks	hg38	GM19468	Cell line	CLO:0026875	Blood	ENCSR635AIF	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,194,345	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM19468;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM19468 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR635AIF] [Orig: Biosample_summary=GM19468;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035739	ENCODE	Download	105,511	54,468,456	pseudoreplicated peaks	hg38	K562	Cell line	EFO:0002067	Blood	ENCSR956DNB	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,743,756	4/26/22	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Orig: Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035740	ENCODE	Download	161,199	121,127,824	pseudoreplicated peaks	hg38	DND-41	Cell line	EFO:0007074	Blood	ENCSR660WSB	1, 2, 3	1_1, 2_1, 3_1	Not applicable	ATAC-seq	bed narrowPeak	4,095,895	4/6/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE DND-41 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035741	ENCODE	Download	190,616	166,783,631	IDR thresholded peaks	hg38	Liver lobe	Tissue	UBERON:0001114	Liver	ENCSR607BTF	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	4,278,034	8/17/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver	Digestive	Adult	ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR607BTF] [Orig: Biosample_summary=Right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver] [Life stage: Adult]
NGEN035742	ENCODE	Download	83,853	70,691,916	IDR thresholded peaks	hg38	Right ventricle	Tissue	UBERON:0002080	Heart	ENCSR204SMO	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	1,892,701	8/20/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle	Cardiovascular	Adult	ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR204SMO] [Orig: Biosample_summary=Heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle] [Life stage: Adult]
NGEN035743	ENCODE	Download	51,843	29,954,737	IDR thresholded peaks	hg38	Dendritic cell	In vitro differentiated cells	CL:0000451	Blood	ENCSR290AUK	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,237,860	1/19/17	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR290AUK] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035744	ENCODE	Download	107,702	84,451,746	IDR thresholded peaks	hg38	Right ventricle	Tissue	UBERON:0002080	Heart	ENCSR053SGP	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	2,445,676	10/8/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle	Cardiovascular	Adult	ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR053SGP] [Orig: Biosample_summary=Heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle] [Life stage: Adult]
NGEN035745	ENCODE	Download	128,539	82,743,326	pseudoreplicated peaks	hg38	Spleen	Tissue	UBERON:0002106	Immune Organ	ENCSR078EBD	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,303,713	6/15/16	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx	Lymphatic	Adult	ENCODE Spleen (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR078EBD] [Orig: Biosample_summary=Spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx] [Life stage: Adult]
NGEN035746	ENCODE	Download	111,078	99,067,089	IDR thresholded peaks	hg38	CD4+ alpha-beta naive T cell	Primary cell	NTR:0000497	Blood	ENCSR373NFA	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	2,521,868	10/13/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell	Cardiovascular	Adult	ENCODE CD4+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR373NFA] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-bet
NGEN035747	ENCODE	Download	138,676	149,648,015	IDR thresholded peaks	hg38	NCI-H929	Cell line	EFO:0001221	Immune	ENCSR382LBS	1, 2, 3	1_1, 2_1, 3_1	Not applicable	ATAC-seq	bed narrowPeak	3,137,530	4/6/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb	Lymphatic	Unknown	ENCODE NCI-H929 (repl. 1, 2, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Orig: Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035748	ENCODE	Download	82,865	71,992,007	conservative IDR thresholded peaks	hg38	Natural killer cell	Primary cell	CL:0000623	Blood	ENCSR808HWS	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	1,861,736	9/9/21	11/20/22	Called peaks	ATAC-seq conservative IDR thresholded peaks	Biosample_summary=Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Adult	ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Orig: Biosample_summary=Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb]
NGEN035749	ENCODE	Download	165,100	129,430,876	replicated peaks	hg38	CD8+ alpha-beta naive T cell	Primary cell	NTR:0000667	Blood	ENCSR863TVR	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	4,316,533	6/8/22	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, a
NGEN035750	ENCODE	Download	209,500	138,032,649	pseudoreplicated peaks	hg38	Left ventricle	Tissue	UBERON:0002084	Heart	ENCSR310RJN	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	5,478,208	8/17/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle	Cardiovascular	Adult	ENCODE Left ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR310RJN] [Orig: Biosample_summary=Heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle] [Life stage: Adult]
NGEN035751	ENCODE	Download	118,210	70,181,533	pseudoreplicated peaks	hg38	GM18499	Cell line	CLO:0024933	Blood	ENCSR700HPA	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,143,352	2/11/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=GM18499;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM18499 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR700HPA] [Orig: Biosample_summary=GM18499;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035752	ENCODE	Download	115,269	85,951,886	pseudoreplicated peaks	hg38	Cardiac septum	Tissue	UBERON:0002099	Heart	ENCSR167SYF	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	2,904,492	6/16/22	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;flag=WARNING, unresolved new name.;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Cardiac septum (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR167SYF] [Orig: Biosample_summary=Cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;flag=WARNING, unresolved new name.;flag=unexpected in remapper] [Life stage: Adult]
NGEN035753	ENCODE	Download	75,844	67,121,796	IDR thresholded peaks	hg38	Left ventricle	Tissue	UBERON:0002084	Heart	ENCSR846VPV	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	1,700,840	8/17/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle	Cardiovascular	Adult	ENCODE Left ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VPV] [Orig: Biosample_summary=Heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle] [Life stage: Adult]
NGEN035754	ENCODE	Download	129,854	119,218,648	IDR thresholded peaks	hg38	IMR-90	Cell line	EFO:0001196	Lung	ENCSR200OML	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,844,128	8/5/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb	Respiratory	Unknown	ENCODE IMR-90 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR200OML] [Orig: Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035755	ENCODE	Download	115,431	54,510,707	pseudoreplicated peaks	hg38	Dendritic cell	In vitro differentiated cells	CL:0000451	Blood	ENCSR679NRJ	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,992,680	1/19/17	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR679NRJ] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035756	ENCODE	Download	254,048	188,465,177	pseudoreplicated peaks	hg38	IMR-90	Cell line	EFO:0001196	Lung	ENCSR200OML	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	6,406,661	8/5/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Respiratory	Unknown	ENCODE IMR-90 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR200OML] [Orig: Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035757	ENCODE	Download	149,626	115,720,900	pseudoreplicated peaks	hg38	T-cell	Primary cell	NTR:0000537	Blood	ENCSR558ZSN	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	3,867,971	9/9/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell	Cardiovascular	Adult	ENCODE T-cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR558ZSN] [Orig: Biosample_summary=Activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell] [Life stage: Adult]
NGEN035758	ENCODE	Download	277,677	226,223,545	replicated peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR913OWV	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	7,135,083	8/24/21	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Unknown	ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Orig: Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Unknown]
NGEN035759	ENCODE	Download	159,905	159,210,142	IDR thresholded peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR709QRD	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	3,433,924	8/24/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Adult]
NGEN035760	ENCODE	Download	73,627	64,027,580	IDR thresholded peaks	hg38	HG03097	Cell line	EFO:0010867	Blood	ENCSR608KJD	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,659,128	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=HG03097;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG03097 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR608KJD] [Orig: Biosample_summary=HG03097;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035761	ENCODE	Download	165,958	118,368,290	pseudoreplicated peaks	hg38	Psoas muscle	Tissue	UBERON:0008450	Skeletal Muscle	ENCSR890DWH	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	4,362,659	8/20/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Muscular	Adult	ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR890DWH] [Orig: Biosample_summary=Psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035762	ENCODE	Download	110,781	93,489,679	IDR thresholded peaks	hg38	GM21390	Cell line	CLO:0015884	Blood	ENCSR024WOD	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,460,830	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM21390;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM21390 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024WOD] [Orig: Biosample_summary=GM21390;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035763	ENCODE	Download	236,013	194,615,708	pseudoreplicated peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR065CER	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	5,866,784	8/24/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR065CER] [Orig: Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Adult]
NGEN035764	ENCODE	Download	95,842	79,453,024	IDR thresholded peaks	hg38	GM21576	Cell line	CLO:0014097	Blood	ENCSR122NDR	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,157,990	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM21576;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM21576 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR122NDR] [Orig: Biosample_summary=GM21576;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035765	ENCODE	Download	216,179	161,568,849	pseudoreplicated peaks	hg38	Mucosa	Tissue	UBERON:0000317	Digestive	ENCSR970UNF	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	5,644,931	8/20/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa	Digestive	Adult	ENCODE Mucosa (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa] [Life stage: Adult]
NGEN035766	ENCODE	Download	119,015	120,282,874	IDR thresholded peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR709QRD	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,577,834	8/24/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Lower motor neurons (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Adult]
NGEN035767	ENCODE	Download	163,882	161,570,687	conservative IDR thresholded peaks	hg38	HCT116	Cell line	EFO:0002824	Digestive	ENCSR872WGW	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	3,496,876	10/8/20	11/20/22	Called peaks	ATAC-seq conservative IDR thresholded peaks	Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE HCT116 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR872WGW] [Orig: Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035768	ENCODE	Download	79,559	70,974,010	IDR thresholded peaks	hg38	Memory B cell	Primary cell	NTR:0000662	Blood	ENCSR302PTB	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,754,128	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell	Cardiovascular	Adult	ENCODE Memory B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Orig: Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell] [Life stage: Adult]
NGEN035769	ENCODE	Download	149,332	93,261,281	pseudoreplicated peaks	hg38	CD8+ alpha-beta naive T cell	Primary cell	NTR:0000502	Blood	ENCSR477YSU	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	3,930,375	10/13/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=Activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE CD8+ alpha-beta naive T cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR477YSU] [Orig: Biosample_summary=Activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD8-positive, alpha-beta T ce
NGEN035770	ENCODE	Download	204,450	179,786,419	IDR thresholded peaks	hg38	Liver lobe	Tissue	UBERON:0001114	Liver	ENCSR685ZMP	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	4,763,630	8/20/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver	Digestive	Adult	ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685ZMP] [Orig: Biosample_summary=Right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver] [Life stage: Adult]
NGEN035771	ENCODE	Download	88,688	72,858,951	IDR thresholded peaks	hg38	Natural killer cell	Primary cell	CL:0000623	Blood	ENCSR044ATC	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	2,001,003	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Adult	ENCODE Natural killer cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR044ATC] [Orig: Biosample_summary=Natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035772	ENCODE	Download	192,391	191,549,523	IDR thresholded peaks	hg38	Lung	Tissue	UBERON:0002168	Lung	ENCSR682ETE	1	1_1, 1_2	Not applicable	ATAC-seq	bed narrowPeak	4,351,295	8/5/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Left lung	Respiratory	Child	ENCODE Lung (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR682ETE] [Orig: Biosample_summary=Left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Left lung] [Life stage: Child]
NGEN035773	ENCODE	Download	115,442	99,976,036	IDR thresholded peaks	hg38	HG02852	Cell line	EFO:0010851	Blood	ENCSR368FYV	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,535,913	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=HG02852;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG02852 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR368FYV] [Orig: Biosample_summary=HG02852;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035774	ENCODE	Download	90,147	79,208,098	IDR thresholded peaks	hg38	Memory B cell	Primary cell	NTR:0000662	Blood	ENCSR302PTB	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	1,976,525	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell	Cardiovascular	Adult	ENCODE Memory B cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Orig: Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell] [Life stage: Adult]
NGEN035775	ENCODE	Download	255,796	183,973,448	pseudoreplicated peaks	hg38	PC-3	Cell line	EFO:0002074	Male Reproductive	ENCSR499ASS	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	6,511,186	10/8/20	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb	Reproductive	Unknown	ENCODE PC-3 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499ASS] [Orig: Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035776	ENCODE	Download	205,459	139,817,860	pseudoreplicated peaks	hg38	GM18867	Cell line	CLO:0026250	Blood	ENCSR492FJO	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	5,257,606	2/11/21	11/20/22	Called peaks	ATAC-seq pseudoreplicated peaks	Biosample_summary=GM18867;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM18867 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR492FJO] [Orig: Biosample_summary=GM18867;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035777	ENCODE	Download	198,597	235,183,766	conservative IDR thresholded peaks	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR291GJU	1, 2, 3	1_1, 2_1, 3_1	Not applicable	ATAC-seq	bed narrowPeak	4,425,691	8/5/20	11/20/22	Called peaks	ATAC-seq conservative IDR thresholded peaks	Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE HepG2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR291GJU] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035778	ENCODE	Download	73,251	59,184,094	IDR thresholded peaks	hg38	Naive B cell	Primary cell	CL:0000788	Blood	ENCSR685OFR	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	1,673,129	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Adult	ENCODE Naive B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685OFR] [Orig: Biosample_summary=Naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035779	ENCODE	Download	537	454,834	IDR thresholded peaks	hg38	T-cell	Primary cell	CL:0000084	Immune	ENCSR032MEH	2	2_1	Not applicable	ATAC-seq	bed narrowPeak	11,993	6/8/22	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=T-cell male adult (43 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb	Lymphatic	Adult	ENCODE T-cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032MEH] [Orig: Biosample_summary=T-cell male adult (43 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035780	ENCODE	Download	180,968	189,856,062	IDR thresholded peaks	hg38	GM23338	Cell line	EFO:0007950	iPSC	ENCSR485TLP	3	3_1	Not applicable	ATAC-seq	bed narrowPeak	4,015,366	8/5/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb	Stem Cell	Unknown	ENCODE GM23338 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR485TLP] [Orig: Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035781	ENCODE	Download	129,282	108,234,354	replicated peaks	hg38	T-cell	Primary cell	CL:0000084	Immune	ENCSR977LVI	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	3,315,722	9/9/21	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=T-cell female adult (21 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb	Lymphatic	Adult	ENCODE T-cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR977LVI] [Orig: Biosample_summary=T-cell female adult (21 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb] [Life stage: Adult]
NGEN035782	ENCODE	Download	184,694	173,602,433	conservative IDR thresholded peaks	hg38	PC-3	Cell line	EFO:0002074	Male Reproductive	ENCSR499ASS	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	4,127,571	10/8/20	11/20/22	Called peaks	ATAC-seq conservative IDR thresholded peaks	Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb	Reproductive	Unknown	ENCODE PC-3 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR499ASS] [Orig: Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035783	ENCODE	Download	105,065	96,984,576	IDR thresholded peaks	hg38	Sigmoid colon	Tissue	UBERON:0001159	Digestive	ENCSR846VLJ	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,319,195	6/15/16	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Project=EN-TEx	Digestive	Adult	ENCODE Sigmoid colon (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VLJ] [Orig: Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Project=EN-TEx] [Life stage: Adult]
NGEN035784	ENCODE	Download	137,581	141,106,281	IDR thresholded peaks	hg38	Panc1	Cell line	EFO:0002713	Digestive	ENCSR591PIX	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	2,889,095	10/8/20	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE Panc1 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Orig: Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035785	ENCODE	Download	134,958	109,848,158	IDR thresholded peaks	hg38	CD8+ alpha-beta effector memory cell	Primary cell	NTR:0000668	Blood	ENCSR335LHS	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	3,051,800	9/9/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;flag=u	Cardiovascular	Adult	ENCODE CD8+ alpha-beta effector memory cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR335LHS] [Orig: Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_poole
NGEN035786	ENCODE	Download	98,025	90,042,767	IDR thresholded peaks	hg38	GM19023	Cell line	EFO:0010835	Blood	ENCSR512FHU	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,140,523	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE GM19023 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR512FHU] [Orig: Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035787	ENCODE	Download	63,083	57,388,766	IDR thresholded peaks	hg38	CD8+ alpha-beta memory T cell	Primary cell	CL:0000907	Blood	ENCSR165FYY	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	1,407,128	6/8/22	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE CD8+ alpha-beta memory T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR165FYY] [Orig: Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult]
NGEN035788	ENCODE	Download	214,965	185,311,643	replicated peaks	hg38	HCT116	Cell line	EFO:0002824	Digestive	ENCSR872WGW	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	5,438,225	10/8/20	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb	Digestive	Unknown	ENCODE HCT116 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Orig: Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035789	ENCODE	Download	237,760	213,779,177	replicated peaks	hg38	Mucosa	Tissue	UBERON:0000317	Digestive	ENCSR970UNF	1, 2	1_1, 1_2, 2_1, 2_2	Not applicable	ATAC-seq	bed narrowPeak	6,490,828	8/20/20	11/20/22	Called peaks	ATAC-seq replicated peaks	Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa	Digestive	Adult	ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;tissue_of_origin=Colon;premapping_cell_type=Colonic mucosa] [Life stage: Adult]
NGEN035790	ENCODE	Download	167,173	171,259,693	IDR thresholded peaks	hg38	Lower motor neurons	In vitro differentiated cells	CL:0000100	Blood	ENCSR131HOY	1, 2	1_1, 2_1	Not applicable	ATAC-seq	bed narrowPeak	3,603,530	8/24/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper	Cardiovascular	Adult	ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR131HOY] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;flag=unexpected in remapper] [Life stage: Adult]
NGEN035791	ENCODE	Download	86,724	63,331,741	IDR thresholded peaks	hg38	HG03565	Cell line	EFO:0010888	Blood	ENCSR835WBW	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,003,042	2/11/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=HG03565;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	Cardiovascular	Unknown	ENCODE HG03565 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR835WBW] [Orig: Biosample_summary=HG03565;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb] [Life stage: Unknown]
NGEN035792	ENCODE	Download	90,588	85,295,847	IDR thresholded peaks	hg38	T-cell	Primary cell	NTR:0000537	Blood	ENCSR993XED	1	1_1	Not applicable	ATAC-seq	bed narrowPeak	2,009,761	6/24/21	11/20/22	Called peaks	ATAC-seq IDR thresholded peaks	Biosample_summary=Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell	Cardiovascular	Adult	ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993XED] [Orig: Biosample_summary=Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell] [Life stage: Adult]

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