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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier	Data Source	Download file	Number of intervals	bp covered	Output type	Genome build	cell type	Biosample type	Biosamples term id	Tissue category	ENCODE Experiment id	Biological replicate(s)	Technical replicate	Antibody	Assay	File format	File size	Release date	Date added to FILER	Data Category	Genomic feature type	Track Description	system category	life stage	trackName
NGEN000298	ENCODE	Download	209,654	17,635,469	predicted transcription start sites	hg19	K562	Cell line	EFO:0002067	Blood	ENCSR000CII	1	1_1	Not applicable	CAGE-Seq	bed bedRnaElements	4,201,007	3/23/11	8/10/18	Transcription Start Sites	CAGE predicted transcription start sites	Biosample_summary=K562 cytosolic fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=wgEncodeRikenCageK562CytosolPamTssHmmV2.bedRnaElements.bigBed	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq predicted transcription start sites (bedRnaElements) [Experiment: ENCSR000CII] [Orig: Biosample_summary=K562 cytosolic fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=wgEncodeRikenCageK562CytosolPamTssHmmV2.bedRnaElements.bigBed] [Life stage: Adult]
NGEN000300	ENCODE	Download	530,070	41,423,614	predicted transcription start sites	hg19	K562	Cell line	EFO:0002067	Blood	ENCSR000CIJ	1	1_1	Not applicable	CAGE-Seq	bed bedRnaElements	10,437,277	3/23/11	8/10/18	Transcription Start Sites	CAGE predicted transcription start sites	Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=wgEncodeRikenCageK562NucleusPamTssHmmV2.bedRnaElements.bigBed	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq predicted transcription start sites (bedRnaElements) [Experiment: ENCSR000CIJ] [Orig: Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=wgEncodeRikenCageK562NucleusPamTssHmmV2.bedRnaElements.bigBed] [Life stage: Adult]
NGEN000470	ENCODE	Download	18,760	1,617,983	transcription start sites	hg19	Keratinocyte	Primary cell	CL:0000312	Skin	ENCSR000CJR	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	979,050	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJR_rep4_1_cage_peaks.bb	Integumentary	Unknown	ENCODE Keratinocyte (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJR] [Orig: Biosample_summary=Keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJR_rep4_1_cage_peaks.bb] [Life stage: Unknown]
NGEN000652	ENCODE	Download	23,358	1,712,218	transcription start sites	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CIW	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	966,353	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CIW_rep1_1_cage_peaks.bb	Digestive	Child	ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIW] [Orig: Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CIW_rep1_1_cage_peaks.bb] [Life stage: Child]
NGEN000688	ENCODE	Download	4,949	362,335	transcription start sites	hg19	Osteoblast	Primary cell	CL:0000062	Bone	ENCSR000CKK	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	131,275	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_ENCSR000CKK_rep2_1_cage_idr.bb	Skeletal	Adult	ENCODE Osteoblast (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKK] [Orig: Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_ENCSR000CKK_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN000713	ENCODE	Download	35,553	4,013,751	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLB	3	3_1	Not applicable	CAGE-Seq	bed tss_peak	1,449,491	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Orig: Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb] [Life stage: Child]
NGEN000846	ENCODE	Download	6,434	600,461	transcription start sites	hg38	CD14+ monocyte	Primary cell	CL:0001054	Blood	ENCSR000CKW	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	168,786	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKW_rep1_1_ENCSR000CKW_rep2_1_cage_idr.bb	Cardiovascular	Unknown	ENCODE CD14+ monocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKW] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKW_rep1_1_ENCSR000CKW_rep2_1_cage_idr.bb] [Life stage: Unknown]
NGEN000848	ENCODE	Download	14,827	1,069,988	transcription start sites	hg38	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CJU	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	803,689	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep2_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJU] [Orig: Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep2_1_cage_peaks.bb] [Life stage: Child]
NGEN000863	ENCODE	Download	18,721	1,582,212	transcription start sites	hg19	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CIT	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	809,717	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878 nucleolus fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIT_rep1_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIT] [Orig: Biosample_summary=GM12878 nucleolus fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIT_rep1_1_cage_peaks.bb] [Life stage: Unknown]
NGEN000893	ENCODE	Download	15,056	1,206,854	transcription start sites	hg19	K562	Cell line	EFO:0002067	Blood	ENCSR000CIM	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	815,250	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Orig: Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN000909	ENCODE	Download	54	2,198	transcription start sites	hg38	Dermal papilla cell	Primary cell	CL:0000346	Hair Follicle	ENCSR000CKI	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	1,459	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;tissue_of_origin=Hair follicle;premapping_cell_type=Hair follicle dermal papilla cell	Integumentary	Adult	ENCODE Dermal papilla cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKI] [Orig: Biosample_summary=Hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;tissue_of_origin=Hair follicle;premapping_cell_type=Hair follicle dermal papilla cell] [Life stage: Adult]
NGEN001007	ENCODE	Download	12,570	782,220	transcription start sites	hg19	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJK	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	666,478	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_cage_peaks.bb	Digestive	Child	ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJK] [Orig: Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_cage_peaks.bb] [Life stage: Child]
NGEN001079	ENCODE	Download	8,135	459,715	transcription start sites	hg19	Osteoblast	Primary cell	CL:0000062	Bone	ENCSR000CKK	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	479,774	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb	Skeletal	Adult	ENCODE Osteoblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Orig: Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN001233	ENCODE	Download	9,249	591,425	transcription start sites	hg19	MCF-7	Cell line	EFO:0001203	Breast	ENCSR000CJO	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	506,289	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=MCF-7 adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CJO_rep2_1_cage_peaks.bb	Reproductive	Adult	ENCODE MCF-7 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJO] [Orig: Biosample_summary=MCF-7 adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CJO_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN001338	ENCODE	Download	20,844	534,424	transcription start sites	hg19	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CIR	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	748,859	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIR] [Orig: Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb] [Life stage: Unknown]
NGEN001408	ENCODE	Download	149	2,944	transcription start sites	hg19	Endothelial cell	Primary cell	CL:0002545	Blood Vessel	ENCSR000CKG	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	6,694	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKG_rep2_1_cage_peaks.bb;tissue_of_origin=Thoracic aorta;premapping_cell_type=Endothelial cell - thoracic aorta	Cardiovascular	Adult	ENCODE Endothelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKG] [Orig: Biosample_summary=Thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKG_rep2_1_cage_peaks.bb;tissue_of_origin=Thoracic aorta;premapping_cell_type=Endothelial cell - thoracic aorta] [Life stage: Adult]
NGEN001447	ENCODE	Download	11,382	1,147,025	transcription start sites	hg19	HeLa-S3	Cell line	EFO:0002791	Female Reproductive	ENCSR000CJJ	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	297,305	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep1_1_ENCSR000CJJ_rep2_1_cage_idr.bb	Reproductive	Adult	ENCODE HeLa-S3 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJJ] [Orig: Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep1_1_ENCSR000CJJ_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN001517	ENCODE	Download	265	5,585	transcription start sites	hg38	Fibroblast	Primary cell	CL:0002547	Blood Vessel	ENCSR000CKF	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	12,073	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKF_rep2_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia	Cardiovascular	Adult	ENCODE Fibroblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKF] [Orig: Biosample_summary=Fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKF_rep2_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia] [Life stage: Adult]
NGEN001569	ENCODE	Download	13,473	1,006,420	transcription start sites	hg19	CD14+ monocyte	Primary cell	CL:0001054	Blood	ENCSR000CKW	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	668,042	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKW_rep2_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE CD14+ monocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKW] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKW_rep2_1_cage_peaks.bb] [Life stage: Unknown]
NGEN001589	ENCODE	Download	13,515	1,062,222	transcription start sites	hg19	K562	Cell line	EFO:0002067	Blood	ENCSR000CJN	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	743,181	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Orig: Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN001593	ENCODE	Download	23,637	2,506,819	transcription start sites	hg38	Endothelial cell	Primary cell	CL:0002618	Umbilical Cord	ENCSR000CJG	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	1,317,633	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Endothelial cell of umbilical vein nuclear fraction newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CJG_rep4_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein	Embryo	Newborn	ENCODE Endothelial cell (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJG] [Orig: Biosample_summary=Endothelial cell of umbilical vein nuclear fraction newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CJG_rep4_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn]
NGEN001605	ENCODE	Download	11,106	1,197,555	transcription start sites	hg38	Keratinocyte	Primary cell	CL:0000312	Skin	ENCSR000CJR	3, 4	3_1 ,4_1	Not applicable	CAGE-Seq	bed idr_peak	289,643	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJR_rep3_1_ENCSR000CJR_rep4_1_cage_idr.bb	Integumentary	Unknown	ENCODE Keratinocyte (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJR] [Orig: Biosample_summary=Keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJR_rep3_1_ENCSR000CJR_rep4_1_cage_idr.bb] [Life stage: Unknown]
NGEN001655	ENCODE	Download	28,333	3,213,146	transcription start sites	hg38	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLB	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	1,451,172	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Orig: Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb] [Life stage: Child]
NGEN001710	ENCODE	Download	12,344	1,222,939	transcription start sites	hg19	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CKA	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	318,493	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep1_1_ENCSR000CKA_rep2_1_cage_idr.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKA] [Orig: Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep1_1_ENCSR000CKA_rep2_1_cage_idr.bb] [Life stage: Unknown]
NGEN001727	ENCODE	Download	15,867	1,214,771	transcription start sites	hg19	A549	Cell line	EFO:0001086	Lung	ENCSR000CJV	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	825,762	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=A549 adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJV_rep1_1_cage_peaks.bb	Respiratory	Adult	ENCODE A549 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJV] [Orig: Biosample_summary=A549 adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJV_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN001892	ENCODE	Download	8,829	352,761	transcription start sites	hg19	Melanocyte	Primary cell	CL:1000458	Skin	ENCSR000CKZ	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	392,266	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb	Integumentary	Adult	ENCODE Melanocyte (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKZ] [Orig: Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN001937	ENCODE	Download	9,827	827,778	transcription start sites	hg38	Keratinocyte	Primary cell	CL:0000312	Skin	ENCSR000CJP	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	255,557	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Keratinocyte female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJP_rep1_1_ENCSR000CJP_rep2_1_cage_idr.bb	Integumentary	Unknown	ENCODE Keratinocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJP] [Orig: Biosample_summary=Keratinocyte female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJP_rep1_1_ENCSR000CJP_rep2_1_cage_idr.bb] [Life stage: Unknown]
NGEN002036	ENCODE	Download	17,484	1,452,856	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKR	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	947,837	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Orig: Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN002079	ENCODE	Download	16,120	1,088,741	transcription start sites	hg19	H1-hESC	Stem cell	EFO:0003042	Stem Cell	ENCSR000CJC	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	918,500	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=H1 cytosolic fraction;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJC_rep2_1_cage_peaks.bb	Stem Cell	Unknown	ENCODE H1-hESC (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJC] [Orig: Biosample_summary=H1 cytosolic fraction;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJC_rep2_1_cage_peaks.bb] [Life stage: Unknown]
NGEN002092	ENCODE	Download	13,510	1,062,680	transcription start sites	hg38	K562	Cell line	EFO:0002067	Blood	ENCSR000CJN	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	791,669	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Orig: Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN002148	ENCODE	Download	28,292	3,201,346	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLB	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	1,298,876	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Orig: Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb] [Life stage: Child]
NGEN002159	ENCODE	Download	246	5,606	transcription start sites	hg38	Epithelial cell	Primary cell	CL:0002327	Breast	ENCSR000CKJ	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	11,009	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Mammary epithelial cell female adult (23 years);Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKJ_rep1_1_cage_peaks.bb;previous_filer_cell_type=Mammary epithelial cell;tissue_of_origin=Mammary;premapping_cell_type=Epithelial cell - mammary	Reproductive	Adult	ENCODE Epithelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKJ] [Orig: Biosample_summary=Mammary epithelial cell female adult (23 years);Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKJ_rep1_1_cage_peaks.bb;previous_filer_cell_type=Mammary epithelial cell;tissue_of_origin=Mammary;premapping_cell_type=Epithelial cell - mammary] [Life stage: Adult]
NGEN002200	ENCODE	Download	12,738	1,234,404	transcription start sites	hg19	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJM	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	326,835	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb	Digestive	Child	ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJM] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN002206	ENCODE	Download	12,006	1,796,538	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLB	3, 4	3_1 ,4_1	Not applicable	CAGE-Seq	bed idr_peak	315,426	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_ENCSR000CLB_rep4_1_cage_idr.bb	Nervous	Child	ENCODE SK-N-SH (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CLB] [Orig: Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_ENCSR000CLB_rep4_1_cage_idr.bb] [Life stage: Child]
NGEN002230	ENCODE	Download	16,898	1,286,818	transcription start sites	hg19	Endothelial cell	Primary cell	CL:0002618	Umbilical Cord	ENCSR000CJE	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	943,506	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Endothelial cell of umbilical vein male newborn and newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CJE_rep2_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein	Embryo	Newborn	ENCODE Endothelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJE] [Orig: Biosample_summary=Endothelial cell of umbilical vein male newborn and newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CJE_rep2_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn]
NGEN002243	ENCODE	Download	13,052	897,175	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKT	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	702,585	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Orig: Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN002308	ENCODE	Download	16,079	1,149,778	transcription start sites	hg38	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CJU	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	871,159	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep1_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJU] [Orig: Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep1_1_cage_peaks.bb] [Life stage: Child]
NGEN002311	ENCODE	Download	13,200	1,502,824	transcription start sites	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJL	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	344,365	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 nuclear fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;GM=[Method- stable transfection\|Category- insertion];Submitted_track_name=ENCSR000CJL_rep1_1_ENCSR000CJL_rep2_1_cage_idr.bb	Digestive	Child	ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJL] [Orig: Biosample_summary=HepG2 nuclear fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;GM=[Method- stable transfection\|Category- insertion];Submitted_track_name=ENCSR000CJL_rep1_1_ENCSR000CJL_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN002375	ENCODE	Download	12,762	1,261,370	transcription start sites	hg19	H1-hESC	Stem cell	EFO:0003042	Stem Cell	ENCSR000CJB	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	330,988	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=H1;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJB_rep1_1_ENCSR000CJB_rep2_1_cage_idr.bb	Stem Cell	Unknown	ENCODE H1-hESC (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJB] [Orig: Biosample_summary=H1;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJB_rep1_1_ENCSR000CJB_rep2_1_cage_idr.bb] [Life stage: Unknown]
NGEN002440	ENCODE	Download	22,607	2,279,677	transcription start sites	hg19	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJL	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	1,070,459	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 nuclear fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;GM=[Method- stable transfection\|Category- insertion];Submitted_track_name=ENCSR000CJL_rep1_1_cage_peaks.bb	Digestive	Child	ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJL] [Orig: Biosample_summary=HepG2 nuclear fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;GM=[Method- stable transfection\|Category- insertion];Submitted_track_name=ENCSR000CJL_rep1_1_cage_peaks.bb] [Life stage: Child]
NGEN002474	ENCODE	Download	53	2,138	transcription start sites	hg19	Dermal papilla cell	Primary cell	CL:0000346	Hair Follicle	ENCSR000CKI	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	1,438	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;tissue_of_origin=Hair follicle;premapping_cell_type=Hair follicle dermal papilla cell	Integumentary	Adult	ENCODE Dermal papilla cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKI] [Orig: Biosample_summary=Hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;tissue_of_origin=Hair follicle;premapping_cell_type=Hair follicle dermal papilla cell] [Life stage: Adult]
NGEN002539	ENCODE	Download	17,374	1,481,293	transcription start sites	hg38	K562	Cell line	EFO:0002067	Blood	ENCSR000CIM	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	977,727	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep2_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Orig: Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN002625	ENCODE	Download	13,024	894,755	transcription start sites	hg38	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKT	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	744,167	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Orig: Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN002630	ENCODE	Download	11,139	1,746,607	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKS	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	294,424	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 nuclear fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKS_rep1_1_ENCSR000CKS_rep2_1_cage_idr.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKS] [Orig: Biosample_summary=IMR-90 nuclear fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKS_rep1_1_ENCSR000CKS_rep2_1_cage_idr.bb] [Life stage: Embryonic]
NGEN002663	ENCODE	Download	100	4,407	transcription start sites	hg19	Epithelial cell	Primary cell	CL:0002577	Placenta	ENCSR000CKM	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	2,614	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep1_1_ENCSR000CKM_rep2_1_cage_idr.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental	Placental	Newborn	ENCODE Epithelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKM] [Orig: Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep1_1_ENCSR000CKM_rep2_1_cage_idr.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental] [Life stage: Newborn]
NGEN002716	ENCODE	Download	7,324	392,611	transcription start sites	hg19	Osteoblast	Primary cell	CL:0000062	Bone	ENCSR000CKK	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	425,337	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep2_1_cage_peaks.bb	Skeletal	Adult	ENCODE Osteoblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Orig: Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN002769	ENCODE	Download	7,651	444,285	transcription start sites	hg19	MCF-7	Cell line	EFO:0001203	Breast	ENCSR000CKU	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	466,888	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=MCF-7 cytosolic fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKU_rep4_1_cage_peaks.bb	Reproductive	Adult	ENCODE MCF-7 (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKU] [Orig: Biosample_summary=MCF-7 cytosolic fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKU_rep4_1_cage_peaks.bb] [Life stage: Adult]
NGEN002777	ENCODE	Download	17,456	1,454,302	transcription start sites	hg38	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKR	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	1,026,876	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Orig: Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN002915	ENCODE	Download	114	3,278	transcription start sites	hg19	Endothelial cell	Primary cell	CL:0002545	Blood Vessel	ENCSR000CKG	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	3,251	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKG_rep1_1_ENCSR000CKG_rep2_1_cage_idr.bb;tissue_of_origin=Thoracic aorta;premapping_cell_type=Endothelial cell - thoracic aorta	Cardiovascular	Adult	ENCODE Endothelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKG] [Orig: Biosample_summary=Thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKG_rep1_1_ENCSR000CKG_rep2_1_cage_idr.bb;tissue_of_origin=Thoracic aorta;premapping_cell_type=Endothelial cell - thoracic aorta] [Life stage: Adult]
NGEN002965	ENCODE	Download	16,703	1,120,309	transcription start sites	hg38	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CJZ	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	971,794	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJZ_rep1_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJZ] [Orig: Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJZ_rep1_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003098	ENCODE	Download	5,555	458,768	transcription start sites	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR000CKB	3, 4	3_1 ,4_1	Not applicable	CAGE-Seq	bed idr_peak	147,694	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=A549 cytosolic fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKB_rep3_1_ENCSR000CKB_rep4_1_cage_idr.bb	Respiratory	Adult	ENCODE A549 (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKB] [Orig: Biosample_summary=A549 cytosolic fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKB_rep3_1_ENCSR000CKB_rep4_1_cage_idr.bb] [Life stage: Adult]
NGEN003101	ENCODE	Download	10,898	742,107	transcription start sites	hg38	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLC	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	696,715	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLC] [Orig: Biosample_summary=SK-N-SH child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb] [Life stage: Child]
NGEN003152	ENCODE	Download	43,905	6,450,080	transcription start sites	hg19	A549	Cell line	EFO:0001086	Lung	ENCSR000CKC	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	1,895,460	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=A549 nuclear fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKC_rep4_1_cage_peaks.bb	Respiratory	Adult	ENCODE A549 (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKC] [Orig: Biosample_summary=A549 nuclear fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKC_rep4_1_cage_peaks.bb] [Life stage: Adult]
NGEN003181	ENCODE	Download	8,201	484,153	transcription start sites	hg19	Keratinocyte	Primary cell	CL:0000312	Skin	ENCSR000CJQ	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	399,336	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Keratinocyte cytosolic fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJQ_rep4_1_cage_peaks.bb	Integumentary	Unknown	ENCODE Keratinocyte (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJQ] [Orig: Biosample_summary=Keratinocyte cytosolic fraction female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJQ_rep4_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003237	ENCODE	Download	5,921	445,250	transcription start sites	hg19	Skeletal muscle satellite cell	Primary cell	CL:0000594	Skeletal Muscle	ENCSR000CLD	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	156,657	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Skeletal muscle satellite cell female adult (64 years) and male adult (21 years);Lab=Piero Carninci, RIKEN;System=musculature;Submitted_track_name=ENCSR000CLD_rep1_1_ENCSR000CLD_rep2_1_cage_idr.bb	Muscular	Adult	ENCODE Skeletal muscle satellite cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CLD] [Orig: Biosample_summary=Skeletal muscle satellite cell female adult (64 years) and male adult (21 years);Lab=Piero Carninci, RIKEN;System=musculature;Submitted_track_name=ENCSR000CLD_rep1_1_ENCSR000CLD_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN003310	ENCODE	Download	8,385	458,758	transcription start sites	hg19	Fibroblast	Primary cell	CL:0002558	Embryo	ENCSR000CKP	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	489,925	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKP_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of villous mesenchyme;tissue_of_origin=Villous mesenchyme;premapping_cell_type=Fibroblast - villous mesenchyme	Embryo	Embryonic	ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKP] [Orig: Biosample_summary=Fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKP_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of villous mesenchyme;tissue_of_origin=Villous mesenchyme;premapping_cell_type=Fibroblast - villous mesenchyme] [Life stage: Embryonic]
NGEN003357	ENCODE	Download	15,288	1,113,835	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKT	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	842,709	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep2_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Orig: Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep2_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN003362	ENCODE	Download	35,559	4,020,491	transcription start sites	hg38	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLB	3	3_1	Not applicable	CAGE-Seq	bed tss_peak	1,591,352	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Orig: Biosample_summary=SK-N-SH nuclear fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb] [Life stage: Child]
NGEN003406	ENCODE	Download	5,227	268,037	transcription start sites	hg19	Mesenchymal stem cell	Stem cell	CL:0002568	Umbilical Cord	ENCSR000CLG	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	296,139	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Mesenchymal stem cell of Wharton's jelly female newborn and male newborn;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CLG_rep2_1_cage_peaks.bb;tissue_of_origin=Wharton's jelly;old_biosample_type=Stem cell;premapping_cell_type=Mesenchymal stem cell - Wharton's jelly;pre_origin_deriv_fix_tissue=Stem Cell;pre_origin_deriv_fix_system=Stem Cell	Embryo	Newborn	ENCODE Mesenchymal stem cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLG] [Orig: Biosample_summary=Mesenchymal stem cell of Wharton's jelly female newborn and male newborn;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CLG_rep2_1_cage_peaks.bb;tissue_of_origin=Wharton's jelly;old_biosample_type=Stem cell;premapping_cell_type=Mesenchymal stem cell - Wharton's jelly;pre_origin_deriv_fix_tissue=Stem Cell;pre_origin_deriv_fix_system=Stem Cell] [Life stage
NGEN003413	ENCODE	Download	16,225	1,147,651	transcription start sites	hg38	AG04450	Cell line	EFO:0006270	Lung	ENCSR000CJW	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	946,700	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=AG04450 embryonic 12 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJW_rep1_1_cage_peaks.bb	Respiratory	Embryonic	ENCODE AG04450 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJW] [Orig: Biosample_summary=AG04450 embryonic 12 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJW_rep1_1_cage_peaks.bb] [Life stage: Embryonic]
NGEN003415	ENCODE	Download	14,993	1,201,861	transcription start sites	hg38	K562	Cell line	EFO:0002067	Blood	ENCSR000CIM	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	879,423	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Orig: Biosample_summary=K562 nuclear fraction adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN003425	ENCODE	Download	1,152	41,152	transcription start sites	hg38	Epithelial cell	Primary cell	CL:0002577	Placenta	ENCSR000CKM	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	52,985	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental	Placental	Newborn	ENCODE Epithelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKM] [Orig: Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental] [Life stage: Newborn]
NGEN003451	ENCODE	Download	18,364	1,481,644	transcription start sites	hg38	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CKA	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	1,025,714	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep1_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKA] [Orig: Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep1_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003452	ENCODE	Download	10,241	862,743	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CJU	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	263,889	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep1_1_ENCSR000CJU_rep2_1_cage_idr.bb	Nervous	Child	ENCODE SK-N-SH (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJU] [Orig: Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CJU_rep1_1_ENCSR000CJU_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN003470	ENCODE	Download	11,649	788,682	transcription start sites	hg19	BJ	Cell line	EFO:0002779	Connective Tissue	ENCSR000CJX	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	620,054	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=BJ;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJX_rep2_1_cage_peaks.bb	Skeletal	Unknown	ENCODE BJ (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJX] [Orig: Biosample_summary=BJ;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJX_rep2_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003524	ENCODE	Download	3,046	219,302	transcription start sites	hg19	Melanocyte	Primary cell	CL:1000458	Skin	ENCSR000CKZ	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	76,314	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_ENCSR000CKZ_rep2_1_cage_idr.bb	Integumentary	Adult	ENCODE Melanocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKZ] [Orig: Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_ENCSR000CKZ_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN003534	ENCODE	Download	19,078	1,524,426	transcription start sites	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJM	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	1,069,500	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep2_1_cage_peaks.bb	Digestive	Child	ENCODE HepG2 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJM] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep2_1_cage_peaks.bb] [Life stage: Child]
NGEN003656	ENCODE	Download	16,856	1,502,548	transcription start sites	hg19	Endothelial cell	Primary cell	CL:0002618	Umbilical Cord	ENCSR000CIV	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	741,009	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CIV_rep1_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein	Embryo	Newborn	ENCODE Endothelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIV] [Orig: Biosample_summary=Endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Piero Carninci, RIKEN;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000CIV_rep1_1_cage_peaks.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn]
NGEN003662	ENCODE	Download	4,984	264,634	transcription start sites	hg19	Endothelial cell	Primary cell	CL:0002543	Blood Vessel	ENCSR000CKN	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	293,283	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKN_rep1_1_cage_peaks.bb;tissue_of_origin=Vein;premapping_cell_type=Endothelial cell - vein	Cardiovascular	Adult	ENCODE Endothelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKN] [Orig: Biosample_summary=Vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKN_rep1_1_cage_peaks.bb;tissue_of_origin=Vein;premapping_cell_type=Endothelial cell - vein] [Life stage: Adult]
NGEN003698	ENCODE	Download	9,100	1,505,636	transcription start sites	hg38	A549	Cell line	EFO:0001086	Lung	ENCSR000CKC	3, 4	3_1 ,4_1	Not applicable	CAGE-Seq	bed idr_peak	243,298	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=A549 nuclear fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKC_rep3_1_ENCSR000CKC_rep4_1_cage_idr.bb	Respiratory	Adult	ENCODE A549 (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKC] [Orig: Biosample_summary=A549 nuclear fraction adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKC_rep3_1_ENCSR000CKC_rep4_1_cage_idr.bb] [Life stage: Adult]
NGEN003706	ENCODE	Download	18,002	1,420,864	transcription start sites	hg19	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CKA	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	967,297	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep2_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKA] [Orig: Biosample_summary=GM12878;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKA_rep2_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003753	ENCODE	Download	20,214	1,711,390	transcription start sites	hg19	H1-hESC	Stem cell	EFO:0003042	Stem Cell	ENCSR000CJB	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	1,075,249	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=H1;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJB_rep2_1_cage_peaks.bb	Stem Cell	Unknown	ENCODE H1-hESC (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJB] [Orig: Biosample_summary=H1;Lab=Piero Carninci, RIKEN;Submitted_track_name=ENCSR000CJB_rep2_1_cage_peaks.bb] [Life stage: Unknown]
NGEN003875	ENCODE	Download	7,145	399,099	transcription start sites	hg19	Fibroblast	Primary cell	CL:0002551	Skin	ENCSR000CKX	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	411,000	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKX_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of dermis;tissue_of_origin=Dermis;premapping_cell_type=Fibroblast - dermis	Integumentary	Adult	ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKX] [Orig: Biosample_summary=Fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKX_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of dermis;tissue_of_origin=Dermis;premapping_cell_type=Fibroblast - dermis] [Life stage: Adult]
NGEN003881	ENCODE	Download	6,591	590,807	transcription start sites	hg38	B cell	Primary cell	CL:0000236	Immune	ENCSR000CKD	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	172,212	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=B cell female adult (27 years) and female adult (43 years);Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKD_rep1_1_ENCSR000CKD_rep2_1_cage_idr.bb	Lymphatic	Adult	ENCODE B cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKD] [Orig: Biosample_summary=B cell female adult (27 years) and female adult (43 years);Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CKD_rep1_1_ENCSR000CKD_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN003907	ENCODE	Download	25,461	2,460,219	transcription start sites	hg19	MCF-7	Cell line	EFO:0001203	Breast	ENCSR000CKV	3	3_1	Not applicable	CAGE-Seq	bed tss_peak	1,056,080	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=MCF-7 nuclear fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKV_rep3_1_cage_peaks.bb	Reproductive	Adult	ENCODE MCF-7 (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKV] [Orig: Biosample_summary=MCF-7 nuclear fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKV_rep3_1_cage_peaks.bb] [Life stage: Adult]
NGEN003929	ENCODE	Download	9,082	748,383	transcription start sites	hg19	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJK	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	234,797	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb	Digestive	Child	ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJK] [Orig: Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN003956	ENCODE	Download	10,557	911,904	transcription start sites	hg19	AG04450	Cell line	EFO:0006270	Lung	ENCSR000CJW	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	274,082	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=AG04450 embryonic 12 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJW_rep1_1_ENCSR000CJW_rep2_1_cage_idr.bb	Respiratory	Embryonic	ENCODE AG04450 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJW] [Orig: Biosample_summary=AG04450 embryonic 12 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJW_rep1_1_ENCSR000CJW_rep2_1_cage_idr.bb] [Life stage: Embryonic]
NGEN003961	ENCODE	Download	9,526	971,726	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKR	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	249,907	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep1_1_ENCSR000CKR_rep2_1_cage_idr.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKR] [Orig: Biosample_summary=IMR-90 cytosolic fraction embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKR_rep1_1_ENCSR000CKR_rep2_1_cage_idr.bb] [Life stage: Embryonic]
NGEN003962	ENCODE	Download	578	14,378	transcription start sites	hg19	Pericyte	Primary cell	CL:2000078	Placenta	ENCSR000CKL	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	26,917	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Placental pericyte female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKL_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Placental pericyte	Placental	Newborn	ENCODE Pericyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKL] [Orig: Biosample_summary=Placental pericyte female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKL_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Placental pericyte] [Life stage: Newborn]
NGEN003966	ENCODE	Download	5,350	385,559	transcription start sites	hg38	Fibroblast	Primary cell	CL:0002558	Embryo	ENCSR000CKP	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	141,634	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKP_rep1_1_ENCSR000CKP_rep2_1_cage_idr.bb;previous_filer_cell_type=Fibroblast of villous mesenchyme;tissue_of_origin=Villous mesenchyme;premapping_cell_type=Fibroblast - villous mesenchyme	Embryo	Embryonic	ENCODE Fibroblast (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKP] [Orig: Biosample_summary=Fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKP_rep1_1_ENCSR000CKP_rep2_1_cage_idr.bb;previous_filer_cell_type=Fibroblast of villous mesenchyme;tissue_of_origin=Villous mesenchyme;premapping_cell_type=Fibroblast - villous mesenchyme] [Life stage: Embryonic]
NGEN004012	ENCODE	Download	6,463	343,254	transcription start sites	hg19	Fibroblast	Primary cell	CL:0002547	Blood Vessel	ENCSR000CKF	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	298,797	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKF_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia	Cardiovascular	Adult	ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKF] [Orig: Biosample_summary=Fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKF_rep1_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia] [Life stage: Adult]
NGEN004015	ENCODE	Download	3,051	200,589	transcription start sites	hg38	Endothelial cell	Primary cell	CL:0002543	Blood Vessel	ENCSR000CKN	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	80,868	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKN_rep1_1_ENCSR000CKN_rep2_1_cage_idr.bb;tissue_of_origin=Vein;premapping_cell_type=Endothelial cell - vein	Cardiovascular	Adult	ENCODE Endothelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKN] [Orig: Biosample_summary=Vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;System=circulatory system;Submitted_track_name=ENCSR000CKN_rep1_1_ENCSR000CKN_rep2_1_cage_idr.bb;tissue_of_origin=Vein;premapping_cell_type=Endothelial cell - vein] [Life stage: Adult]
NGEN004022	ENCODE	Download	8,320	783,399	transcription start sites	hg19	IMR-90	Cell line	EFO:0001196	Lung	ENCSR000CKT	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	219,078	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_ENCSR000CKT_rep2_1_cage_idr.bb	Respiratory	Embryonic	ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKT] [Orig: Biosample_summary=IMR-90 embryonic 16 weeks;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CKT_rep1_1_ENCSR000CKT_rep2_1_cage_idr.bb] [Life stage: Embryonic]
NGEN004084	ENCODE	Download	16,399	1,214,046	transcription start sites	hg19	HeLa-S3	Cell line	EFO:0002791	Female Reproductive	ENCSR000CJJ	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	897,332	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb	Reproductive	Adult	ENCODE HeLa-S3 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJJ] [Orig: Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN004128	ENCODE	Download	1,143	40,805	transcription start sites	hg19	Epithelial cell	Primary cell	CL:0002577	Placenta	ENCSR000CKM	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	52,623	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental	Placental	Newborn	ENCODE Epithelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKM] [Orig: Biosample_summary=Placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;old_tissue_category=Placenta;tissue_of_origin=Placenta;premapping_cell_type=Epithelial cell - placental] [Life stage: Newborn]
NGEN004155	ENCODE	Download	7,653	385,785	transcription start sites	hg19	Fibroblast	Primary cell	CL:0002551	Skin	ENCSR000CKX	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	440,812	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKX_rep2_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of dermis;tissue_of_origin=Dermis;premapping_cell_type=Fibroblast - dermis	Integumentary	Adult	ENCODE Fibroblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKX] [Orig: Biosample_summary=Fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKX_rep2_1_cage_peaks.bb;previous_filer_cell_type=Fibroblast of dermis;tissue_of_origin=Dermis;premapping_cell_type=Fibroblast - dermis] [Life stage: Adult]
NGEN004269	ENCODE	Download	8,162	459,447	transcription start sites	hg38	Osteoblast	Primary cell	CL:0000062	Bone	ENCSR000CKK	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	501,403	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb	Skeletal	Adult	ENCODE Osteoblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Orig: Biosample_summary=Osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;System=skeletal system;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN004274	ENCODE	Download	9,035	349,405	transcription start sites	hg19	Melanocyte	Primary cell	CL:1000458	Skin	ENCSR000CKY	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	403,954	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Melanocyte of skin male child (1 year) and male child (3 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKY_rep2_1_cage_peaks.bb	Integumentary	Child	ENCODE Melanocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKY] [Orig: Biosample_summary=Melanocyte of skin male child (1 year) and male child (3 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKY_rep2_1_cage_peaks.bb] [Life stage: Child]
NGEN004289	ENCODE	Download	10,725	692,869	transcription start sites	hg19	A549	Cell line	EFO:0001086	Lung	ENCSR000CJV	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	562,645	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=A549 adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJV_rep2_1_cage_peaks.bb	Respiratory	Adult	ENCODE A549 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJV] [Orig: Biosample_summary=A549 adult 58 years;Lab=Piero Carninci, RIKEN;System=respiratory system;Submitted_track_name=ENCSR000CJV_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN004342	ENCODE	Download	14,369	1,037,768	transcription start sites	hg19	K562	Cell line	EFO:0002067	Blood	ENCSR000CJN	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	810,073	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep2_1_cage_peaks.bb	Cardiovascular	Adult	ENCODE K562 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Orig: Biosample_summary=K562 adult 53 years;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CJN_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN004358	ENCODE	Download	9,013	739,355	transcription start sites	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJK	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	232,971	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb	Digestive	Child	ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJK] [Orig: Biosample_summary=HepG2 cytosolic fraction child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN004423	ENCODE	Download	8,841	356,299	transcription start sites	hg38	Melanocyte	Primary cell	CL:1000458	Skin	ENCSR000CKZ	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	401,362	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb	Integumentary	Adult	ENCODE Melanocyte (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKZ] [Orig: Biosample_summary=Melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb] [Life stage: Adult]
NGEN004456	ENCODE	Download	6,606	377,683	transcription start sites	hg38	MCF-7	Cell line	EFO:0001203	Breast	ENCSR000CKU	3	3_1	Not applicable	CAGE-Seq	bed tss_peak	419,961	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=MCF-7 cytosolic fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKU_rep3_1_cage_peaks.bb	Reproductive	Adult	ENCODE MCF-7 (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKU] [Orig: Biosample_summary=MCF-7 cytosolic fraction adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CKU_rep3_1_cage_peaks.bb] [Life stage: Adult]
NGEN004539	ENCODE	Download	10,905	744,649	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLC	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	649,799	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLC] [Orig: Biosample_summary=SK-N-SH child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb] [Life stage: Child]
NGEN004661	ENCODE	Download	12,746	1,229,785	transcription start sites	hg38	HepG2	Cell line	EFO:0001187	Liver	ENCSR000CJM	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	326,934	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb	Digestive	Child	ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJM] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Piero Carninci, RIKEN;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb] [Life stage: Child]
NGEN004678	ENCODE	Download	16,396	1,212,403	transcription start sites	hg38	HeLa-S3	Cell line	EFO:0002791	Female Reproductive	ENCSR000CJJ	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	953,917	3/23/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb	Reproductive	Adult	ENCODE HeLa-S3 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJJ] [Orig: Biosample_summary=HeLa-S3 adult 31 years;Lab=Piero Carninci, RIKEN;System=reproductive system;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb] [Life stage: Adult]
NGEN004688	ENCODE	Download	6,853	672,740	transcription start sites	hg38	MCF-7	Cell line	EFO:0001203	Breast	ENCSR000CJO	1, 2	1_1 ,2_1	Not applicable	CAGE-Seq	bed idr_peak	171,220	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=MCF-7 adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CJO_rep1_1_ENCSR000CJO_rep2_1_cage_idr.bb	Reproductive	Adult	ENCODE MCF-7 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJO] [Orig: Biosample_summary=MCF-7 adult 69 years;Lab=Piero Carninci, RIKEN;System=integumental system,exocrine system;Submitted_track_name=ENCSR000CJO_rep1_1_ENCSR000CJO_rep2_1_cage_idr.bb] [Life stage: Adult]
NGEN004798	ENCODE	Download	11,695	754,987	transcription start sites	hg19	SK-N-SH	Cell line	EFO:0003072	Brain	ENCSR000CLA	4	4_1	Not applicable	CAGE-Seq	bed tss_peak	699,196	5/2/12	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=SK-N-SH cytosolic fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLA_rep4_1_cage_peaks.bb	Nervous	Child	ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLA] [Orig: Biosample_summary=SK-N-SH cytosolic fraction child 4 years;Lab=Piero Carninci, RIKEN;System=central nervous system;Submitted_track_name=ENCSR000CLA_rep4_1_cage_peaks.bb] [Life stage: Child]
NGEN004840	ENCODE	Download	20,870	530,922	transcription start sites	hg38	GM12878	Cell line	EFO:0002784	Blood	ENCSR000CIR	1	1_1	Not applicable	CAGE-Seq	bed tss_peak	748,017	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb	Cardiovascular	Unknown	ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIR] [Orig: Biosample_summary=GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;System=immune system;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb] [Life stage: Unknown]
NGEN004925	ENCODE	Download	13,636	884,863	transcription start sites	hg38	Keratinocyte	Primary cell	CL:0000312	Skin	ENCSR000CJP	2	2_1	Not applicable	CAGE-Seq	bed tss_peak	801,253	12/22/11	8/10/18	Transcription Start Sites	CAGE transcription start sites	Biosample_summary=Keratinocyte female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJP_rep2_1_cage_peaks.bb	Integumentary	Unknown	ENCODE Keratinocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJP] [Orig: Biosample_summary=Keratinocyte female;Lab=Piero Carninci, RIKEN;System=integumental system;Submitted_track_name=ENCSR000CJP_rep2_1_cage_peaks.bb] [Life stage: Unknown]

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