Browse FILER
To select specific FILER datasets, use any of the filters below in any order:
Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN000019 | ENCODE | Download | 11,045 | 21,296,076,238 | long range chromatin interactions | hg19 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR000BZX | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 369,703 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=HCT116;Lab=Yijun Ruan, JAX;System=digestive system;Submitted_track_name=wgEncodeGisChiaPetHct116Pol2InteractionsRep1.bigBed | Digestive | Unknown | ENCODE HCT116 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZX] [Orig: Biosample_summary=HCT116;Lab=Yijun Ruan, JAX;System=digestive system;Submitted_track_name=wgEncodeGisChiaPetHct116Pol2InteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000020 | ENCODE | Download | 63,867 | 106,253,000,000 | long range chromatin interactions | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BZW | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 2,040,457 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed | Reproductive | Unknown | ENCODE HeLa-S3 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZW] [Orig: Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000021 | ENCODE | Download | 25,721 | 6,807,037,432 | long range chromatin interactions | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CAC | 1 | 1_1 | CTCF | ChIA-PET | bed bed12 | 969,937 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET CTCF long range chromatin interactions | Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562CtcfInteractionsRep1.bigBed | Cardiovascular | Unknown | ENCODE K562 (repl. 1) ChIA-PET CTCF long range chromatin interactions (bed12) [Experiment: ENCSR000CAC] [Orig: Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562CtcfInteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000022 | ENCODE | Download | 222,936 | 23,168,438,883 | long range chromatin interactions | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BZY | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 8,408,346 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562Pol2InteractionsRep1.bigBed | Cardiovascular | Unknown | ENCODE K562 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZY] [Orig: Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562Pol2InteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000023 | ENCODE | Download | 227,005 | 21,603,943,746 | long range chromatin interactions | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BZY | 2 | 2_1 | POLR2A | ChIA-PET | bed bed12 | 8,562,106 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562Pol2InteractionsRep2.bigBed | Cardiovascular | Unknown | ENCODE K562 (repl. 2) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZY] [Orig: Biosample_summary=K562;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisChiaPetK562Pol2InteractionsRep2.bigBed] [Life stage: Unknown] |
| NGEN000024 | ENCODE | Download | 53,762 | 19,349,810,825 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAD | 1 | 1_1 | CTCF | ChIA-PET | bed bed12 | 2,008,304 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET CTCF long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7CtcfInteractionsRep1.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) ChIA-PET CTCF long range chromatin interactions (bed12) [Experiment: ENCSR000CAD] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7CtcfInteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000025 | ENCODE | Download | 22,099 | 9,060,977,995 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAD | 2 | 2_1 | CTCF | ChIA-PET | bed bed12 | 844,232 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET CTCF long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7CtcfInteractionsRep2.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 2) ChIA-PET CTCF long range chromatin interactions (bed12) [Experiment: ENCSR000CAD] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7CtcfInteractionsRep2.bigBed] [Life stage: Unknown] |
| NGEN000026 | ENCODE | Download | 4,318 | 1,736,183,127 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 1 | 1_1 | ESR1 | ChIA-PET | bed bed12 | 164,541 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000027 | ENCODE | Download | 5,498 | 2,320,670,350 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 2 | 2_1 | ESR1 | ChIA-PET | bed bed12 | 208,287 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 2) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed] [Life stage: Unknown] |
| NGEN000028 | ENCODE | Download | 2,433 | 1,698,620,256 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 3 | 3_1 | ESR1 | ChIA-PET | bed bed12 | 92,117 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 3) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed] [Life stage: Unknown] |
| NGEN000029 | ENCODE | Download | 5,842 | 4,211,606,391 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAA | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 212,676 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep1.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAA] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN000030 | ENCODE | Download | 5,726 | 5,887,122,124 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAA | 2 | 2_1 | POLR2A | ChIA-PET | bed bed12 | 208,280 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep2.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 2) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAA] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep2.bigBed] [Life stage: Unknown] |
| NGEN000031 | ENCODE | Download | 175,078 | 32,783,801,564 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAA | 3 | 3_1 | POLR2A | ChIA-PET | bed bed12 | 6,608,381 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep3.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 3) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAA] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep3.bigBed] [Life stage: Unknown] |
| NGEN000032 | ENCODE | Download | 238,638 | 43,929,353,362 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CAA | 4 | 4_1 | POLR2A | ChIA-PET | bed bed12 | 8,985,949 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep4.bigBed | Reproductive | Unknown | ENCODE MCF-7 (repl. 4) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAA] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7Pol2InteractionsRep4.bigBed] [Life stage: Unknown] |
| NGEN000033 | ENCODE | Download | 11,832 | 15,721,374,097 | long range chromatin interactions | hg19 | NB4 | Cell line | EFO:0002798 | Blood | ENCSR000CAB | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 392,479 | 5/24/12 | 8/10/18 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed | Cardiovascular | Unknown | ENCODE NB4 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAB] [Orig: Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed] [Life stage: Unknown] |
| NGEN036892 | ENCODE | Download | 51,241 | 44,543,252 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | NTR:0000666 | Blood | ENCSR217TFN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 782,707 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR217TFN] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036893 | ENCODE | Download | 48,188 | 41,613,025 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR154MAJ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 764,111 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036894 | ENCODE | Download | 28,343 | 36,611,297 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR789ZIJ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 444,933 | 12/18/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR789ZIJ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Child] |
| NGEN036895 | ENCODE | Download | 34,492 | 25,195,847 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR676KCF | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 525,496 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb | Renal | Unknown | ENCODE HEK293T (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036896 | ENCODE | Download | 43,339 | 27,876,258 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR093CTT | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 672,569 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036897 | ENCODE | Download | 49,416 | 44,776,439 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 783,787 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036898 | ENCODE | Download | 29,381 | 23,937,348 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR880DSH | 3 | 3_1 | POLR2A | ChIA-PET | bed broadPeak | 442,126 | 2/26/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Adult | ENCODE K562 (repl. 3) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036899 | ENCODE | Download | 66,968 | 53,256,388 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR291RCO | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 1,045,590 | 8/2/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell] [L |
| NGEN036900 | ENCODE | Download | 42,940 | 38,689,183 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 659,740 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036901 | ENCODE | Download | 73,116 | 63,122,252 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR763OCG | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,092,805 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult] |
| NGEN036902 | ENCODE | Download | 60,133 | 58,106,153 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR569TBN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 941,213 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR569TBN] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036903 | ENCODE | Download | 24,649 | 13,888,556 | peaks | hg38 | H1-hESC | Cell line | EFO:0003042 | Stem Cell | ENCSR095SXC | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 389,923 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1 | Stem Cell | Unknown | ENCODE H1-hESC (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1] [Life stage: Unknown] |
| NGEN036904 | ENCODE | Download | 65,672 | 55,264,394 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR314TNQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 985,700 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036905 | ENCODE | Download | 40,061 | 29,287,763 | peaks | hg38 | CD8+ T cell | Primary cell | CL:0000625 | Blood | ENCSR180GEY | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 627,644 | 8/2/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036906 | ENCODE | Download | 73,830 | 65,665,853 | peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR114QCL | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,115,296 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114QCL] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;flag |
| NGEN036907 | ENCODE | Download | 63,643 | 49,563,216 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR550JJT | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 965,016 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell] [Life |
| NGEN036908 | ENCODE | Download | 123,479 | 107,897,263 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR278IZK | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 1,942,593 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Adult | ENCODE HCT116 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036909 | ENCODE | Download | 64,394 | 61,068,290 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | NTR:0000504 | Blood | ENCSR041UPG | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 958,843 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR041UPG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036910 | ENCODE | Download | 22,163 | 12,491,598 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR962FFY | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 337,828 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036911 | ENCODE | Download | 46,302 | 33,139,011 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | CL:0000906 | Blood | ENCSR408MRB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 729,499 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR408MRB] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036912 | ENCODE | Download | 25,082 | 14,323,145 | peaks | hg38 | H1-hESC | Cell line | EFO:0003042 | Stem Cell | ENCSR095SXC | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 403,624 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1 | Stem Cell | Unknown | ENCODE H1-hESC (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1] [Life stage: Unknown] |
| NGEN036913 | ENCODE | Download | 103,156 | 78,619,964 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR035PVZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 1,549,264 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Adult | ENCODE HCT116 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036914 | ENCODE | Download | 68,425 | 60,673,045 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | CL:0000909 | Blood | ENCSR149TQU | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,011,443 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR149TQU] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036915 | ENCODE | Download | 43,425 | 28,175,621 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR905HWW | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 630,237 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Unknown | ENCODE GM12878 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036916 | ENCODE | Download | 55,562 | 46,289,006 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR905HWW | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 814,487 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Unknown | ENCODE GM12878 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036917 | ENCODE | Download | 28,451 | 28,036,631 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR597AKG | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 473,877 | 3/12/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Adult | ENCODE K562 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036918 | ENCODE | Download | 50,295 | 35,766,014 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 768,621 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036919 | ENCODE | Download | 64,128 | 54,351,018 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR314TNQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 941,486 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036920 | ENCODE | Download | 54,636 | 38,638,646 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | NTR:0000666 | Blood | ENCSR531UMR | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 863,779 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR531UMR] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036921 | ENCODE | Download | 36,719 | 35,099,632 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR411IVB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 593,837 | 3/12/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Child] |
| NGEN036922 | ENCODE | Download | 65,073 | 56,625,638 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR402NAQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 997,511 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR402NAQ] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036923 | ENCODE | Download | 49,793 | 45,801,642 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 3 | 3_1 | CTCF | ChIA-PET | bed broadPeak | 820,002 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 3) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
| NGEN036924 | ENCODE | Download | 47,567 | 42,998,985 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 764,764 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
| NGEN036925 | ENCODE | Download | 31,520 | 26,602,453 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR773XVD | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 483,337 | 12/16/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb | Renal | Unknown | ENCODE HEK293T (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036926 | ENCODE | Download | 60,163 | 46,391,683 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR733XLQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 870,080 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036927 | ENCODE | Download | 26,768 | 19,280,861 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR403ZYJ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 416,404 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb | Reproductive | Adult | ENCODE MCF 10A (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036928 | ENCODE | Download | 46,168 | 33,743,325 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR962FFY | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 688,297 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036929 | ENCODE | Download | 28,828 | 27,846,208 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR597AKG | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 482,755 | 3/12/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Adult | ENCODE K562 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036930 | ENCODE | Download | 18,969 | 12,780,419 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR911ZMB | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 305,298 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb | Respiratory | Adult | ENCODE A549 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036931 | ENCODE | Download | 34,617 | 28,035,679 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR080OMN | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 498,804 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
| NGEN036932 | ENCODE | Download | 55,607 | 42,924,100 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR106INW | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 853,653 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036933 | ENCODE | Download | 58,692 | 48,924,469 | peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | NTR:0000669 | Blood | ENCSR114KEO | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 834,255 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114KEO] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cel |
| NGEN036934 | ENCODE | Download | 32,662 | 27,466,426 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR138NSW | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 495,907 | 1/12/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb | Respiratory | Adult | ENCODE A549 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036935 | ENCODE | Download | 58,446 | 44,937,475 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR733XLQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 850,802 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036936 | ENCODE | Download | 28,585 | 21,685,354 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR403ZYJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 454,496 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb | Reproductive | Adult | ENCODE MCF 10A (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036937 | ENCODE | Download | 24,683 | 17,215,728 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 410,960 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
| NGEN036938 | ENCODE | Download | 70,144 | 66,531,073 | peaks | hg38 | Naive thymus-derived CD8+, alpha-beta T cell | Primary cell | CL:0000900 | Blood | ENCSR064OTE | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,055,720 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR064OTE] [Orig: Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult] |
| NGEN036939 | ENCODE | Download | 48,527 | 48,808,330 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR857MYZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 748,750 | 12/30/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Child | ENCODE HepG2 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Child] |
| NGEN036940 | ENCODE | Download | 54,365 | 40,357,463 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR550JJT | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 836,748 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell] [Life |
| NGEN036941 | ENCODE | Download | 50,785 | 41,533,436 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR446MTI | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 735,447 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell] |
| NGEN036942 | ENCODE | Download | 34,139 | 24,274,761 | peaks | hg38 | H1-hESC | Cell line | EFO:0003042 | Stem Cell | ENCSR782EKZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 486,107 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1 | Stem Cell | Unknown | ENCODE H1-hESC (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1] [Life stage: Unknown] |
| NGEN036943 | ENCODE | Download | 72,052 | 66,092,291 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR278IZK | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 1,128,267 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Adult | ENCODE HCT116 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036944 | ENCODE | Download | 46,772 | 32,234,121 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR731OFF | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 661,466 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036945 | ENCODE | Download | 44,788 | 33,552,986 | peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | NTR:0000669 | Blood | ENCSR378IUJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 705,644 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR378IUJ] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;fla |
| NGEN036946 | ENCODE | Download | 33,389 | 25,239,846 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | CL:0000909 | Blood | ENCSR187PXW | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 529,430 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR187PXW] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036947 | ENCODE | Download | 22,766 | 15,907,228 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 368,780 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036948 | ENCODE | Download | 33,822 | 26,894,403 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR763OCG | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 504,333 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult] |
| NGEN036949 | ENCODE | Download | 24,144 | 20,761,867 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR411IVB | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 387,598 | 3/12/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Child | ENCODE HepG2 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Child] |
| NGEN036950 | ENCODE | Download | 29,801 | 20,009,261 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR184YZV | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 473,169 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Unknown | ENCODE GM12878 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036951 | ENCODE | Download | 60,917 | 48,578,015 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR154MAJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 951,109 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036952 | ENCODE | Download | 55,494 | 47,880,739 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR877ZRR | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 849,932 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR877ZRR] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036953 | ENCODE | Download | 27,926 | 25,246,855 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR138NSW | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 421,144 | 1/12/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb | Respiratory | Adult | ENCODE A549 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036954 | ENCODE | Download | 45,615 | 33,716,960 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | CL:0000906 | Blood | ENCSR982KEM | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 689,224 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR982KEM] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036955 | ENCODE | Download | 31,049 | 20,569,097 | peaks | hg38 | CD8+ T cell | Primary cell | CL:0000625 | Blood | ENCSR180GEY | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 482,965 | 8/2/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD8+ T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036956 | ENCODE | Download | 22,600 | 15,650,012 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 362,709 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036957 | ENCODE | Download | 32,240 | 25,060,934 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR080OMN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 469,515 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
| NGEN036958 | ENCODE | Download | 51,429 | 46,244,534 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 815,933 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036959 | ENCODE | Download | 59,706 | 43,399,705 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR120LMS | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 890,781 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR120LMS] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;flag=unexpected in remapper] [Life stage: Adult] |
| NGEN036960 | ENCODE | Download | 54,970 | 42,256,844 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR106INW | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 862,530 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036961 | ENCODE | Download | 28,828 | 19,810,962 | peaks | hg38 | H1-hESC | Cell line | EFO:0003042 | Stem Cell | ENCSR782EKZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 427,189 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1 | Stem Cell | Unknown | ENCODE H1-hESC (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;premapping_cell_type=H1] [Life stage: Unknown] |
| NGEN036962 | ENCODE | Download | 66,383 | 58,593,350 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR446MTI | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,017,037 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell] [Li |
| NGEN036963 | ENCODE | Download | 60,310 | 54,109,552 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR159PXF | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 942,739 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR159PXF] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell] |
| NGEN036964 | ENCODE | Download | 59,341 | 51,874,539 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR291RCO | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 937,815 | 8/2/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell] [L |
| NGEN036965 | ENCODE | Download | 102,798 | 63,058,596 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR035PVZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,508,972 | 4/6/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Adult | ENCODE HCT116 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036966 | ENCODE | Download | 46,963 | 51,048,001 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR857MYZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 730,278 | 12/30/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Child] |
| NGEN036967 | ENCODE | Download | 30,274 | 23,746,147 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR499JGQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 467,110 | 12/16/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb | Reproductive | Adult | ENCODE MCF 10A (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036968 | ENCODE | Download | 34,532 | 29,271,887 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR499JGQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 535,629 | 12/16/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb | Reproductive | Adult | ENCODE MCF 10A (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036969 | ENCODE | Download | 52,712 | 39,380,390 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR731OFF | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 811,376 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036970 | ENCODE | Download | 32,545 | 30,115,089 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR773XVD | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 499,934 | 12/16/20 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb | Renal | Unknown | ENCODE HEK293T (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036971 | ENCODE | Download | 31,503 | 26,014,302 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | NTR:0000504 | Blood | ENCSR697ZHG | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 494,912 | 10/6/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR697ZHG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell] [Life stage: Adult] |
| NGEN036972 | ENCODE | Download | 18,082 | 11,932,192 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR911ZMB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 280,574 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb | Respiratory | Adult | ENCODE A549 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
| NGEN036973 | ENCODE | Download | 40,986 | 29,857,334 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR093CTT | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 639,925 | 7/21/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell] [Life stage: Adult] |
| NGEN036974 | ENCODE | Download | 31,686 | 23,098,719 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR676KCF | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 483,977 | 1/25/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb | Renal | Unknown | ENCODE HEK293T (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036975 | ENCODE | Download | 36,390 | 27,947,066 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR184YZV | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 535,221 | 9/9/21 | 11/20/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Unknown | ENCODE GM12878 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Unknown] |
| NGEN036976 | ENCODE | Download | 14,083 | 8,375,078 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR880DSH | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 213,872 | 2/26/21 | 11/20/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb | Cardiovascular | Adult | ENCODE K562 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb] [Life stage: Adult] |
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