Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
#Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
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NGEN000439 | ENCODE | Download | 89,821 | 28,071,062 | hotspots | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR000FEK | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,498,304 | 9/22/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=SK-MEL-5;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000FEK_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Integumentary | Unknown | ENCODE SK-MEL-5 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FEK] [Orig: Biosample_summary=SK-MEL-5;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000FEK_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000440 | ENCODE | Download | 78,717 | 23,675,609 | hotspots | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000EOQ | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,302,327 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOQ] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
NGEN000445 | ENCODE | Download | 112,652 | 35,474,056 | hotspots | hg38 | Endothelial cell | Primary cell | CL:2000016 | Lung | ENCSR000EOD | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,875,705 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Lung miscrovascular;premapping_cell_type=Lung microvascular endothelial cell | Respiratory | Unknown | ENCODE Endothelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOD] [Orig: Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Lung miscrovascular;premapping_cell_type=Lung microvascular endothelial cell] [Life stage: Unknown] |
NGEN000463 | ENCODE | Download | 104,545 | 15,681,359 | peaks | hg19 | Epithelial cell | Primary cell | CL:0002231 | Male Reproductive | ENCSR000EPU | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,039,958 | 10/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;tissue_of_origin=Prostate;premapping_cell_type=Epithelial cell - prostate | Reproductive | Unknown | ENCODE Epithelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPU] [Orig: Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;tissue_of_origin=Prostate;premapping_cell_type=Epithelial cell - prostate] [Life stage: Unknown] |
NGEN000509 | ENCODE | Download | 91,119 | 26,540,385 | hotspots | hg19 | Epithelial cell | Primary cell | CL:0002327 | Breast | ENCSR000ENV | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,513,034 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Mammary epithelial cell female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENV_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Mammary epithelial cell;tissue_of_origin=Mammary;premapping_cell_type=Epithelial cell - mammary | Reproductive | Unknown | ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENV] [Orig: Biosample_summary=Mammary epithelial cell female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENV_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Mammary epithelial cell;tissue_of_origin=Mammary;premapping_cell_type=Epithelial cell - mammary] [Life stage: Unknown] |
NGEN000511 | ENCODE | Download | 490,583 | 73,577,482 | peaks | hg19 | Myoblast | Primary cell | CL:0000515 | Skeletal Muscle | ENCSR000EOO | 1 | 1_1 ,1_3 | Not applicable | DNase-seq | bed narrowPeak | 4,906,885 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Skeletal muscle myoblast;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EOO_rep1_1_rep1_3_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Skeletal muscle;premapping_cell_type=Skeletal muscle myoblast | Muscular | Unknown | ENCODE Myoblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOO] [Orig: Biosample_summary=Skeletal muscle myoblast;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EOO_rep1_1_rep1_3_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Skeletal muscle;premapping_cell_type=Skeletal muscle myoblast] [Life stage: Unknown] |
NGEN000512 | ENCODE | Download | 76,078 | 21,654,813 | hotspots | hg19 | WI38 | Cell line | EFO:0001260 | Lung | ENCSR000EQM | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,246,544 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours;Lab=John Stamatoyannopoulos, UW;System=respiratory system;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR000EQM_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Respiratory | Unknown | ENCODE WI38 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQM] [Orig: Biosample_summary=WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours;Lab=John Stamatoyannopoulos, UW;System=respiratory system;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR000EQM_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000522 | ENCODE | Download | 123,317 | 38,221,371 | hotspots | hg38 | WERI-Rb-1 | Cell line | EFO:0005715 | Eye | ENCSR000EQL | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 2,039,795 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EQL_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Sensory | Unknown | ENCODE WERI-Rb-1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQL] [Orig: Biosample_summary=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EQL_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000524 | ENCODE | Download | 128,579 | 19,286,097 | peaks | hg38 | Fibroblast | Primary cell | CL:0002555 | Breast | ENCSR000ENW | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 1,286,737 | 12/14/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENW_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of mammary gland;tissue_of_origin=Mammary gland;premapping_cell_type=Fibroblast - mammary gland | Reproductive | Unknown | ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENW] [Orig: Biosample_summary=Fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENW_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of mammary gland;tissue_of_origin=Mammary gland;premapping_cell_type=Fibroblast - mammary gland] [Life stage: Unknown] |
NGEN000545 | ENCODE | Download | 94,323 | 33,012,441 | hotspots | hg38 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR000FJH | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 1,584,357 | 9/22/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=NCI-H460;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000FJH_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Respiratory | Unknown | ENCODE NCI-H460 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FJH] [Orig: Biosample_summary=NCI-H460;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000FJH_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000551 | ENCODE | Download | 213,706 | 32,011,194 | peaks | hg38 | Coronary artery | Tissue | UBERON:0001621 | Blood Vessel | ENCSR060HPL | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,039,578 | 10/1/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Coronary artery tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR060HPL_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx | Cardiovascular | Adult | ENCODE Coronary artery (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR060HPL] [Orig: Biosample_summary=Coronary artery tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR060HPL_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx] [Life stage: Adult] |
NGEN000571 | ENCODE | Download | 224,567 | 124,405,799 | hotspots | hg38 | Retina | Tissue | UBERON:0000966 | Eye | ENCSR621ENC | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,566,563 | 5/9/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Retina tissue embryo (74 days) and embryo (85 days);Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR621ENC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Sensory | Embryonic | ENCODE Retina (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR621ENC] [Orig: Biosample_summary=Retina tissue embryo (74 days) and embryo (85 days);Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR621ENC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000576 | ENCODE | Download | 338,622 | 50,760,739 | peaks | hg19 | Lung | Tissue | UBERON:0002048 | Lung | ENCSR582IPV | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 3,390,031 | 9/22/16 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Lung tissue embryo (80 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR582IPV_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Respiratory | Embryonic | ENCODE Lung (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR582IPV] [Orig: Biosample_summary=Lung tissue embryo (80 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR582IPV_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Embryonic] |
NGEN000577 | ENCODE | Download | 122,351 | 64,238,873 | hotspots | hg19 | T-helper 2 cell | Primary cell | CL:0000546 | Immune | ENCSR000EQG | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,988,261 | 7/23/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=T-helper 2 cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQG_rep2_1_pe_bwa_biorep_filtered_hotspots.bb | Lymphatic | Unknown | ENCODE T-helper 2 cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQG] [Orig: Biosample_summary=T-helper 2 cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQG_rep2_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000578 | ENCODE | Download | 264,417 | 39,622,175 | peaks | hg38 | PC-9 | Cell line | EFO:0002847 | Lung | ENCSR940NLN | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 2,655,388 | 8/18/15 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=PC-9;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR940NLN_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Respiratory | Unknown | ENCODE PC-9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR940NLN] [Orig: Biosample_summary=PC-9;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR940NLN_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000583 | ENCODE | Download | 47,560 | 9,781,209 | hotspots | hg38 | H54 | Cell line | EFO:0002782 | Brain | ENCSR000EJA | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 752,572 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=H54;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EJA_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Nervous | Unknown | ENCODE H54 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EJA] [Orig: Biosample_summary=H54;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EJA_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000602 | ENCODE | Download | 38,846 | 13,840,612 | hotspots | hg38 | GM06990 | Cell line | EFO:0002783 | Blood | ENCSR000EMQ | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 646,487 | 4/7/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE GM06990 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMQ] [Orig: Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000603 | ENCODE | Download | 263,184 | 39,451,201 | peaks | hg38 | H9 | Stem cell | EFO:0003045 | Stem Cell | ENCSR275ICP | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 2,626,244 | 12/13/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=H9;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR275ICP_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Stem Cell | Unknown | ENCODE H9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR275ICP] [Orig: Biosample_summary=H9;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR275ICP_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000604 | ENCODE | Download | 114,507 | 17,174,655 | peaks | hg19 | CD14+ monocyte | Primary cell | CL:0001054 | Blood | ENCSR000EPK | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,153,996 | 10/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=CD14-positive monocyte female;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EPK_rep2_1_se_bwa_biorep_filtered_peaks.bb | Cardiovascular | Unknown | ENCODE CD14+ monocyte (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPK] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EPK_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000605 | ENCODE | Download | 202,228 | 76,757,772 | hotspots | hg19 | CD1c+ myeloid dendritic cell | Primary cell | CL:0002399 | Blood | ENCSR373BIX | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,314,553 | 5/11/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=CD1c-positive myeloid dendritic cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR373BIX_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE CD1c+ myeloid dendritic cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR373BIX] [Orig: Biosample_summary=CD1c-positive myeloid dendritic cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR373BIX_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000609 | ENCODE | Download | 58,293 | 8,743,236 | peaks | hg38 | T-helper 2 cell | Primary cell | CL:0000546 | Immune | ENCSR000EQH | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 587,024 | 7/23/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=T-helper 2 cell female adult (26 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQH_rep1_1_se_bwa_biorep_filtered_peaks.bb | Lymphatic | Adult | ENCODE T-helper 2 cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EQH] [Orig: Biosample_summary=T-helper 2 cell female adult (26 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQH_rep1_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Adult] |
NGEN000615 | ENCODE | Download | 57,473 | 22,437,164 | hotspots | hg19 | T-helper 1 cell | Primary cell | CL:0000545 | Immune | ENCSR000EQE | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 954,543 | 7/23/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=T-helper 1 cell male adult (33 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQE_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Lymphatic | Adult | ENCODE T-helper 1 cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQE] [Orig: Biosample_summary=T-helper 1 cell male adult (33 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQE_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Adult] |
NGEN000619 | ENCODE | Download | 132,139 | 19,819,494 | peaks | hg38 | GM04504 | Cell line | NTR:0000477 | Skin | ENCSR000EMP | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 1,324,448 | 3/6/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=GM04504;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMP_rep1_1_se_bwa_biorep_filtered_peaks.bb | Integumentary | Unknown | ENCODE GM04504 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMP] [Orig: Biosample_summary=GM04504;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMP_rep1_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000627 | ENCODE | Download | 139,839 | 20,974,494 | peaks | hg19 | Endothelial cell | Primary cell | CL:2000010 | Blood Vessel | ENCSR000ENY | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,394,929 | 12/14/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep2_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Dermis blood vessel;premapping_cell_type=Endothelial cell - eermis blood vessel | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENY] [Orig: Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep2_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Dermis blood vessel;premapping_cell_type=Endothelial cell - eermis blood vessel] [Life stage: Adult] |
NGEN000630 | ENCODE | Download | 313,549 | 46,986,485 | peaks | hg19 | Medulloblastoma | Cell line | EFO:0002939 | Brain | ENCSR000ELB | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 3,041,703 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb | Nervous | Unknown | ENCODE Medulloblastoma (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ELB] [Orig: Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000647 | ENCODE | Download | 248,305 | 96,691,625 | hotspots | hg19 | NB4 | Cell line | EFO:0002798 | Blood | ENCSR000EPL | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 4,019,429 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=NB4;Lab=John Stamatoyannopoulos, UW;System=skeletal system,immune system;Submitted_track_name=ENCSR000EPL_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE NB4 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPL] [Orig: Biosample_summary=NB4;Lab=John Stamatoyannopoulos, UW;System=skeletal system,immune system;Submitted_track_name=ENCSR000EPL_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000655 | ENCODE | Download | 393,223 | 168,840,155 | hotspots | hg19 | Islet precursor cell | In vitro differentiated cells | NTR:0001484 | Digestive | ENCSR224FOA | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 6,250,247 | 1/11/18 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Islet precursor cell, female embryo (5 days);Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR224FOA_rep2_1_pe_bwa_biorep_filtered_hotspots.bb | Digestive | Embryonic | ENCODE Islet precursor cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR224FOA] [Orig: Biosample_summary=Islet precursor cell, female embryo (5 days);Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR224FOA_rep2_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000659 | ENCODE | Download | 95,097 | 14,263,435 | peaks | hg38 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR959ZXU | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 952,535 | 8/18/15 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR959ZXU_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Reproductive | Unknown | ENCODE HeLa-S3 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR959ZXU] [Orig: Biosample_summary=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR959ZXU_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000666 | ENCODE | Download | 323,864 | 117,181,936 | hotspots | hg38 | iPS-NIHi7 | Induced pluripotent stem cell line | EFO:0007953 | iPSC | ENCSR000EKK | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed broadPeak | 5,127,731 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=iPS-NIHi7 originated from AG08395;Lab=Gregory Crawford, Duke;System=integumental system;Submitted_track_name=ENCSR000EKK_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Stem Cell | Unknown | ENCODE iPS-NIHi7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKK] [Orig: Biosample_summary=iPS-NIHi7 originated from AG08395;Lab=Gregory Crawford, Duke;System=integumental system;Submitted_track_name=ENCSR000EKK_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000684 | ENCODE | Download | 101,228 | 28,882,183 | hotspots | hg19 | NT2/D1 | Cell line | EFO:0005236 | Male Reproductive | ENCSR000EPS | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 1,669,913 | 10/19/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=NT2/D1;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPS_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Reproductive | Unknown | ENCODE NT2/D1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPS] [Orig: Biosample_summary=NT2/D1;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPS_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000690 | ENCODE | Download | 104,578 | 31,528,120 | hotspots | hg19 | Fibroblast | Primary cell | CL:0002550 | Eye | ENCSR000ENK | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 1,743,483 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;tissue_of_origin=Conjunctiva;premapping_cell_type=Fibroblast - conjunctiva | Sensory | Unknown | ENCODE Fibroblast (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENK] [Orig: Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;tissue_of_origin=Conjunctiva;premapping_cell_type=Fibroblast - conjunctiva] [Life stage: Unknown] |
NGEN000694 | ENCODE | Download | 158,273 | 23,730,712 | peaks | hg38 | Endothelial cell | Primary cell | CL:1000892 | Kidney | ENCSR988YKR | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 1,573,891 | 5/9/18 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Kidney capillary endothelial cell female embryo (113 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system,excretory system;Submitted_track_name=ENCSR988YKR_rep1_1_rep1_2_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Kidney capillary;premapping_cell_type=Kidney capillary endothelial cell | Renal | Embryonic | ENCODE Endothelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR988YKR] [Orig: Biosample_summary=Kidney capillary endothelial cell female embryo (113 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system,excretory system;Submitted_track_name=ENCSR988YKR_rep1_1_rep1_2_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Kidney capillary;premapping_cell_type=Kidney capillary endothelial cell] [Life stage: Embryonic] |
NGEN000696 | ENCODE | Download | 190,135 | 28,496,254 | peaks | hg38 | Dedifferentiated mesenchymal stem cell | Stem cell | NTR:0005063 | Stem Cell | ENCSR820WLP | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,904,006 | 5/9/16 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR820WLP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Amniotic fluid;old_biosample_type=Stem cell;premapping_cell_type=Dedifferentiated amniotic fluid mesenchymal stem cell | Stem Cell | Embryonic | ENCODE Dedifferentiated mesenchymal stem cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR820WLP] [Orig: Biosample_summary=Dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR820WLP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Amniotic fluid;old_biosample_type=Stem cell;premapping_cell_type=Dedifferentiated amniotic fluid mesenchymal stem cell] [Life stage: Embryonic] |
NGEN000711 | ENCODE | Download | 137,563 | 20,604,270 | peaks | hg19 | Frontal cortex | Tissue | UBERON:0001870 | Brain | ENCSR000EIY | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,334,831 | 8/28/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Frontal cortex tissue female adult (67 years) and female adult (80 years);Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EIY_rep2_1_se_bwa_biorep_filtered_peaks.bb | Nervous | Adult | ENCODE Frontal cortex (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIY] [Orig: Biosample_summary=Frontal cortex tissue female adult (67 years) and female adult (80 years);Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EIY_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Adult] |
NGEN000716 | ENCODE | Download | 196,016 | 115,233,041 | hotspots | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000EOQ | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,217,004 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOQ] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn] |
NGEN000724 | ENCODE | Download | 36,988 | 5,541,645 | peaks | hg38 | Hepatocyte | Primary cell | CL:0000182 | Liver | ENCSR000EJU | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 377,590 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Hepatocyte;Lab=Gregory Crawford, Duke;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000EJU_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb | Digestive | Unknown | ENCODE Hepatocyte (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJU] [Orig: Biosample_summary=Hepatocyte;Lab=Gregory Crawford, Duke;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000EJU_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000733 | ENCODE | Download | 244,531 | 36,670,413 | peaks | hg38 | Epithelial cell | Cell line | NTR:0004520 | Digestive | ENCSR038XTK | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,485,090 | 12/13/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=HCEC 1CT;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR038XTK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Colon;old_biosample_type=Cell line;premapping_cell_type=Colon epithelial cell line | Digestive | Unknown | ENCODE Epithelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR038XTK] [Orig: Biosample_summary=HCEC 1CT;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR038XTK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Colon;old_biosample_type=Cell line;premapping_cell_type=Colon epithelial cell line] [Life stage: Unknown] |
NGEN000734 | ENCODE | Download | 3 | 711 | hotspots | hg38 | Medulloblastoma | Cell line | EFO:0002939 | Brain | ENCSR000ELB | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 141 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Nervous | Unknown | ENCODE Medulloblastoma (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELB] [Orig: Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000737 | ENCODE | Download | 198,083 | 81,892,716 | hotspots | hg38 | Hematopoietic multipotent progenitor cell | In vitro differentiated cells | CL:0000837 | Blood | ENCSR098PTC | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 3,247,244 | 8/31/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_2_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Adult | ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_2_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Adult] |
NGEN000743 | ENCODE | Download | 238,287 | 120,301,177 | hotspots | hg38 | Stomach | Tissue | UBERON:0000945 | Digestive | ENCSR095GWE | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 3,825,388 | 9/22/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Stomach tissue male embryo (58 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR095GWE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb | Digestive | Embryonic | ENCODE Stomach (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR095GWE] [Orig: Biosample_summary=Stomach tissue male embryo (58 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR095GWE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000748 | ENCODE | Download | 262,614 | 39,386,719 | peaks | hg38 | Endothelial cell | Primary cell | CL:2000016 | Lung | ENCSR000EOD | 1 | 1_1 ,1_3 | Not applicable | DNase-seq | bed narrowPeak | 2,661,572 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep1_3_rep1_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Lung miscrovascular;premapping_cell_type=Lung microvascular endothelial cell | Respiratory | Unknown | ENCODE Endothelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOD] [Orig: Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep1_3_rep1_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Lung miscrovascular;premapping_cell_type=Lung microvascular endothelial cell] [Life stage: Unknown] |
NGEN000756 | ENCODE | Download | 133,564 | 20,033,503 | peaks | hg38 | LHCN-M2 | Cell line | EFO:0005714 | Skeletal Muscle | ENCSR000EPE | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,339,098 | 6/12/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=LHCN-M2;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EPE_rep2_1_se_bwa_biorep_filtered_peaks.bb | Muscular | Unknown | ENCODE LHCN-M2 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPE] [Orig: Biosample_summary=LHCN-M2;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EPE_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000762 | ENCODE | Download | 221,326 | 33,140,667 | peaks | hg19 | Vagina | Tissue | UBERON:0000996 | Female Reproductive | ENCSR437AYW | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,067,035 | 10/1/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Vagina tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR437AYW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx | Reproductive | Adult | ENCODE Vagina (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR437AYW] [Orig: Biosample_summary=Vagina tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR437AYW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx] [Life stage: Adult] |
NGEN000774 | ENCODE | Download | 146,522 | 21,976,129 | peaks | hg38 | LNCaP clone FGC | Cell line | EFO:0005726 | Male Reproductive | ENCSR000EPF | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,458,014 | 5/4/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=LNCaP clone FGC;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPF_rep2_1_se_bwa_biorep_filtered_peaks.bb | Reproductive | Unknown | ENCODE LNCaP clone FGC (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPF] [Orig: Biosample_summary=LNCaP clone FGC;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPF_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000784 | ENCODE | Download | 203,477 | 89,216,737 | hotspots | hg38 | Kidney | Tissue | UBERON:0002113 | Urinary | ENCSR873ANE | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 3,275,620 | 12/13/17 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb | Renal | Embryonic | ENCODE Kidney (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR873ANE] [Orig: Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000788 | ENCODE | Download | 75,755 | 11,356,229 | peaks | hg38 | GM19240 | Cell line | EFO:0002790 | Blood | ENCSR000EJL | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 767,652 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=GM19240;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJL_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb | Cardiovascular | Unknown | ENCODE GM19240 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJL] [Orig: Biosample_summary=GM19240;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJL_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000801 | ENCODE | Download | 231,209 | 34,679,095 | peaks | hg38 | Hematopoietic multipotent progenitor cell | In vitro differentiated cells | CL:0000837 | Blood | ENCSR845CFB | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 2,344,823 | 8/31/15 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR845CFB_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Cardiovascular | Adult | ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR845CFB] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR845CFB_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Adult] |
NGEN000803 | ENCODE | Download | 296,201 | 44,388,907 | peaks | hg38 | AG08396 | Cell line | NTR:0000484 | Lung | ENCSR000EIW | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed narrowPeak | 2,889,694 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb | Respiratory | Unknown | ENCODE AG08396 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIW] [Orig: Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN000823 | ENCODE | Download | 257,774 | 115,901,729 | hotspots | hg19 | Kidney | Tissue | UBERON:0002113 | Urinary | ENCSR066WZJ | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 4,163,505 | 5/9/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Kidney tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR066WZJ_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Renal | Embryonic | ENCODE Kidney (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR066WZJ] [Orig: Biosample_summary=Kidney tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR066WZJ_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000827 | ENCODE | Download | 95,650 | 28,984,611 | hotspots | hg38 | GM12865 | Cell line | EFO:0005338 | Blood | ENCSR000EMS | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,588,676 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=GM12865;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMS_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE GM12865 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMS] [Orig: Biosample_summary=GM12865;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMS_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000832 | ENCODE | Download | 233,856 | 35,071,566 | peaks | hg38 | Ammon's horn | Tissue | UBERON:0001954 | Brain | ENCSR584LUZ | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,375,319 | 5/9/16 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Ammon's horn tissue male adult (84 years);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR584LUZ_rep1_1_pe_bwa_biorep_filtered_peaks.bb | Nervous | Adult | ENCODE Ammon's horn (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR584LUZ] [Orig: Biosample_summary=Ammon's horn tissue male adult (84 years);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR584LUZ_rep1_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Adult] |
NGEN000840 | ENCODE | Download | 140,821 | 45,758,636 | hotspots | hg19 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR946DXB | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 2,292,301 | 1/29/18 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Heart left ventricle tissue female embryo (101 days) and female embryo (103 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR501FWC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Embryonic | ENCODE Left ventricle (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR946DXB] [Orig: Biosample_summary=Heart left ventricle tissue female embryo (101 days) and female embryo (103 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR501FWC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN000841 | ENCODE | Download | 104,714 | 15,706,727 | peaks | hg38 | Epithelial cell | Primary cell | CL:0002231 | Male Reproductive | ENCSR000EPU | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,042,443 | 10/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;tissue_of_origin=Prostate;premapping_cell_type=Epithelial cell - prostate | Reproductive | Unknown | ENCODE Epithelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPU] [Orig: Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;tissue_of_origin=Prostate;premapping_cell_type=Epithelial cell - prostate] [Life stage: Unknown] |
NGEN000849 | ENCODE | Download | 339,110 | 127,630,367 | hotspots | hg19 | Epithelial cell | Primary cell | CL:0000706 | Brain | ENCSR000ENL | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 5,557,497 | 12/14/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Choroid plexus epithelial cell;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Choroid plexus epithelial cell;tissue_of_origin=Choroid plexus;premapping_cell_type=Epithelial cell - choroid plexus | Nervous | Unknown | ENCODE Epithelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENL] [Orig: Biosample_summary=Choroid plexus epithelial cell;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Choroid plexus epithelial cell;tissue_of_origin=Choroid plexus;premapping_cell_type=Epithelial cell - choroid plexus] [Life stage: Unknown] |
NGEN000870 | ENCODE | Download | 35,878 | 15,037,275 | hotspots | hg38 | Caco-2 | Cell line | EFO:0001099 | Digestive | ENCSR000EMI | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 593,328 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Caco-2;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000EMI_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Digestive | Unknown | ENCODE Caco-2 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMI] [Orig: Biosample_summary=Caco-2;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000EMI_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000883 | ENCODE | Download | 82,289 | 26,662,267 | hotspots | hg38 | GM19238 | Cell line | EFO:0002788 | Blood | ENCSR000EJJ | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 1,334,041 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=GM19238;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJJ_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE GM19238 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EJJ] [Orig: Biosample_summary=GM19238;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJJ_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000904 | ENCODE | Download | 58,516 | 19,973,935 | hotspots | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR000EPT | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 966,001 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Digestive | Unknown | ENCODE Panc1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPT] [Orig: Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000906 | ENCODE | Download | 140,294 | 62,007,554 | hotspots | hg19 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR462XTM | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 2,194,611 | 11/1/17 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Sigmoid colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR462XTM_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR462XTM] [Orig: Biosample_summary=Sigmoid colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR462XTM_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx] [Life stage: Adult] |
NGEN000908 | ENCODE | Download | 197,206 | 81,692,192 | hotspots | hg19 | Hematopoietic multipotent progenitor cell | In vitro differentiated cells | CL:0000837 | Blood | ENCSR098PTC | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 3,233,091 | 8/31/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Adult | ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Adult] |
NGEN000931 | ENCODE | Download | 241,775 | 88,147,622 | hotspots | hg38 | T47D | Cell line | EFO:0001247 | Female Reproductive | ENCSR000EQB | 1 | 1_1 ,1_3 | Not applicable | DNase-seq | bed broadPeak | 3,952,717 | 3/6/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=T47D;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EQB_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Reproductive | Unknown | ENCODE T47D (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQB] [Orig: Biosample_summary=T47D;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EQB_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000960 | ENCODE | Download | 88,670 | 40,451,624 | hotspots | hg38 | Hematopoietic multipotent progenitor cell | In vitro differentiated cells | CL:0000837 | Blood | ENCSR937UWI | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 1,444,931 | 11/5/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR937UWI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Adult | ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR937UWI] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR937UWI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Adult] |
NGEN000967 | ENCODE | Download | 160,595 | 54,708,913 | hotspots | hg38 | M059J | Cell line | EFO:0005697 | Brain | ENCSR000EPG | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 2,657,111 | 6/12/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=M059J;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPG_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Nervous | Unknown | ENCODE M059J (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPG] [Orig: Biosample_summary=M059J;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPG_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN000979 | ENCODE | Download | 124,599 | 18,688,439 | peaks | hg38 | Fibroblast | Primary cell | CL:0002547 | Blood Vessel | ENCSR000EMC | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 1,247,098 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Fibroblast of the aortic adventitia female;Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR000EMC_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia | Cardiovascular | Unknown | ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMC] [Orig: Biosample_summary=Fibroblast of the aortic adventitia female;Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR000EMC_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;tissue_of_origin=Aortic adventitia;premapping_cell_type=Fibroblast - aortic adventitia] [Life stage: Unknown] |
NGEN000984 | ENCODE | Download | 519,541 | 77,856,971 | peaks | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000EKN | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed narrowPeak | 4,892,502 | 8/28/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=K562 treated with 1 ?M vorinostat for 72 hours;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKN_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb | Cardiovascular | Unknown | ENCODE K562 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EKN] [Orig: Biosample_summary=K562 treated with 1 ?M vorinostat for 72 hours;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKN_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001002 | ENCODE | Download | 88,295 | 13,243,493 | peaks | hg38 | AG04449 | Cell line | NTR:0000478 | Skin | ENCSR000ELX | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 883,545 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000ELX_rep1_1_se_bwa_biorep_filtered_peaks.bb | Integumentary | Unknown | ENCODE AG04449 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ELX] [Orig: Biosample_summary=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000ELX_rep1_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001015 | ENCODE | Download | 204,974 | 30,707,528 | peaks | hg19 | B cell | Tissue | UBERON:0010754 | Blood | ENCSR000EIZ | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 1,981,383 | 8/28/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Germinal center tissue;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EIZ_rep1_2_rep1_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Germinal center;premapping_cell_type=Germinal center B cell | Cardiovascular | Unknown | ENCODE B cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIZ] [Orig: Biosample_summary=Germinal center tissue;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EIZ_rep1_2_rep1_1_se_bwa_biorep_filtered_peaks.bb;tissue_of_origin=Germinal center;premapping_cell_type=Germinal center B cell] [Life stage: Unknown] |
NGEN001016 | ENCODE | Download | 188,072 | 28,175,478 | peaks | hg19 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR760QZM | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 1,804,373 | 10/2/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Transverse colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR760QZM_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx | Digestive | Adult | ENCODE Transverse colon (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR760QZM] [Orig: Biosample_summary=Transverse colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR760QZM_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx] [Life stage: Adult] |
NGEN001040 | ENCODE | Download | 436,787 | 65,512,994 | peaks | hg38 | GM23248 | Cell line | EFO:0005723 | Skin | ENCSR217TAW | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 4,361,054 | 6/17/15 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=GM23248;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR217TAW_rep1_1_pe_bwa_biorep_filtered_peaks.bb | Integumentary | Unknown | ENCODE GM23248 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR217TAW] [Orig: Biosample_summary=GM23248;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR217TAW_rep1_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001042 | ENCODE | Download | 100,002 | 14,995,052 | peaks | hg38 | H9 | Stem cell | EFO:0003045 | Stem Cell | ENCSR000EJP | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed narrowPeak | 1,000,776 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=H9;Lab=Gregory Crawford, Duke;Submitted_track_name=ENCSR000EJP_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb | Stem Cell | Unknown | ENCODE H9 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJP] [Orig: Biosample_summary=H9;Lab=Gregory Crawford, Duke;Submitted_track_name=ENCSR000EJP_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001046 | ENCODE | Download | 107,406 | 50,216,363 | hotspots | hg19 | HK-2 | Cell line | NTR:0000487 | Urinary | ENCSR634YVQ | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 1,783,494 | 5/9/18 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=HK-2;Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR634YVQ_rep1_1_rep1_2_pe_bwa_biorep_filtered_hotspots.bb | Renal | Unknown | ENCODE HK-2 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR634YVQ] [Orig: Biosample_summary=HK-2;Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR634YVQ_rep1_1_rep1_2_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001047 | ENCODE | Download | 42,078 | 6,309,164 | peaks | hg19 | GM06990 | Cell line | EFO:0002783 | Blood | ENCSR000EMQ | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 425,882 | 4/7/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_peaks.bb | Cardiovascular | Unknown | ENCODE GM06990 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMQ] [Orig: Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001067 | ENCODE | Download | 221,957 | 97,774,915 | hotspots | hg38 | Endothelial cell | Primary cell | CL:2000010 | Blood Vessel | ENCSR000ENY | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,640,200 | 12/14/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep1_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Dermis blood vessel;premapping_cell_type=Endothelial cell - eermis blood vessel | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENY] [Orig: Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep1_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Dermis blood vessel;premapping_cell_type=Endothelial cell - eermis blood vessel] [Life stage: Adult] |
NGEN001095 | ENCODE | Download | 243,721 | 89,818,294 | hotspots | hg38 | AG08396 | Cell line | NTR:0000484 | Lung | ENCSR000EIW | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed broadPeak | 3,892,208 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Respiratory | Unknown | ENCODE AG08396 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EIW] [Orig: Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001100 | ENCODE | Download | 81,334 | 29,081,774 | hotspots | hg19 | Brain | Tissue | UBERON:0000955 | Brain | ENCSR475VQD | 2 | 2_1 ,2_2 | Not applicable | DNase-seq | bed broadPeak | 1,332,291 | 8/31/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Brain tissue male embryo (72 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR475VQD_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb | Nervous | Embryonic | ENCODE Brain (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR475VQD] [Orig: Biosample_summary=Brain tissue male embryo (72 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR475VQD_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN001104 | ENCODE | Download | 365,201 | 54,774,952 | peaks | hg38 | Fibroblast | Primary cell | CL:1001608 | Skin | ENCSR000EPP | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 3,651,638 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Foreskin fibroblast male newborn;Lab=John Stamatoyannopoulos, UW;System=reproductive system,integumental system;Submitted_track_name=ENCSR000EPP_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Foreskin fibroblast;tissue_of_origin=Foreskin;premapping_cell_type=Fibroblast - foreskin | Integumentary | Newborn | ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPP] [Orig: Biosample_summary=Foreskin fibroblast male newborn;Lab=John Stamatoyannopoulos, UW;System=reproductive system,integumental system;Submitted_track_name=ENCSR000EPP_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Foreskin fibroblast;tissue_of_origin=Foreskin;premapping_cell_type=Fibroblast - foreskin] [Life stage: Newborn] |
NGEN001105 | ENCODE | Download | 270,418 | 126,423,462 | hotspots | hg19 | Muscularis mucosa | Tissue | UBERON:0004648 | Digestive | ENCSR944JCE | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 4,235,854 | 11/1/17 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Esophagus muscularis mucosa tissue male adult (37 years);Lab=John Stamatoyannopoulos, UW;System=musculature,digestive system;Submitted_track_name=ENCSR944JCE_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;tissue_of_origin=Esophagus;premapping_cell_type=Esophagus muscularis mucosa | Digestive | Adult | ENCODE Muscularis mucosa (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR944JCE] [Orig: Biosample_summary=Esophagus muscularis mucosa tissue male adult (37 years);Lab=John Stamatoyannopoulos, UW;System=musculature,digestive system;Submitted_track_name=ENCSR944JCE_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;tissue_of_origin=Esophagus;premapping_cell_type=Esophagus muscularis mucosa] [Life stage: Adult] |
NGEN001123 | ENCODE | Download | 166,210 | 58,696,272 | hotspots | hg38 | Hematopoietic multipotent progenitor cell | In vitro differentiated cells | CL:0000837 | Blood | ENCSR098PTC | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 2,747,148 | 8/31/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep2_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Adult | ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep2_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Adult] |
NGEN001126 | ENCODE | Download | 136,307 | 41,390,692 | hotspots | hg38 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000EPH | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 2,248,004 | 6/12/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=MCF-7;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EPH_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPH] [Orig: Biosample_summary=MCF-7;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EPH_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001141 | ENCODE | Download | 205,562 | 30,817,077 | peaks | hg38 | Kidney | Tissue | UBERON:0002113 | Urinary | ENCSR873ANE | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,079,908 | 12/13/17 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep1_1_pe_bwa_biorep_filtered_peaks.bb | Renal | Embryonic | ENCODE Kidney (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR873ANE] [Orig: Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep1_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Embryonic] |
NGEN001151 | ENCODE | Download | 118,854 | 35,575,817 | hotspots | hg38 | Fibroblast | Primary cell | CL:0002550 | Eye | ENCSR000ENK | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,979,206 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;tissue_of_origin=Conjunctiva;premapping_cell_type=Fibroblast - conjunctiva | Sensory | Unknown | ENCODE Fibroblast (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENK] [Orig: Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;tissue_of_origin=Conjunctiva;premapping_cell_type=Fibroblast - conjunctiva] [Life stage: Unknown] |
NGEN001191 | ENCODE | Download | 128,832 | 40,440,748 | hotspots | hg38 | Left cardiac atrium | Tissue | UBERON:0002079 | Heart | ENCSR412NMI | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 2,100,148 | 10/23/17 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Left cardiac atrium tissue female embryo (101 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR412NMI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Embryonic | ENCODE Left cardiac atrium (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR412NMI] [Orig: Biosample_summary=Left cardiac atrium tissue female embryo (101 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR412NMI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN001203 | ENCODE | Download | 116,015 | 37,160,486 | hotspots | hg38 | CD14+ monocyte | Primary cell | CL:0001054 | Blood | ENCSR000ELE | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 1,852,069 | 8/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=CD14-positive monocyte female;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000ELE_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE CD14+ monocyte (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELE] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000ELE_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001209 | ENCODE | Download | 69,404 | 10,405,669 | peaks | hg19 | Smooth muscle cell | Primary cell | CL:0002590 | Brain | ENCSR000ENG | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 693,740 | 3/6/12 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Smooth muscle cell of the brain vasculature female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENG_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Smooth muscle cell of the brain vasculature;tissue_of_origin=Brain vascular;premapping_cell_type=Smooth muscle cell - brain vascular | Nervous | Unknown | ENCODE Smooth muscle cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENG] [Orig: Biosample_summary=Smooth muscle cell of the brain vasculature female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENG_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Smooth muscle cell of the brain vasculature;tissue_of_origin=Brain vascular;premapping_cell_type=Smooth muscle cell - brain vascular] [Life stage: Unknown] |
NGEN001215 | ENCODE | Download | 262,214 | 107,863,954 | hotspots | hg38 | HT1080 | Cell line | EFO:0002059 | Connective Tissue | ENCSR000FDI | 2 | 2_1 ,2_2 | Not applicable | DNase-seq | bed broadPeak | 4,280,684 | 3/31/15 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=HT1080;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000FDI_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb | Skeletal | Unknown | ENCODE HT1080 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FDI] [Orig: Biosample_summary=HT1080;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000FDI_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001218 | ENCODE | Download | 240,830 | 107,066,271 | hotspots | hg19 | Heart | Tissue | UBERON:0000948 | Heart | ENCSR804RSI | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,874,487 | 5/9/16 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Heart tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR804RSI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Embryonic | ENCODE Heart (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR804RSI] [Orig: Biosample_summary=Heart tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR804RSI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb] [Life stage: Embryonic] |
NGEN001228 | ENCODE | Download | 171,010 | 75,557,178 | hotspots | hg19 | NAMALWA | Cell line | EFO:0002246 | Immune | ENCSR301OGM | 1 | 1_1 ,1_3 | Not applicable | DNase-seq | bed broadPeak | 2,773,517 | 5/9/18 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=NAMALWA treated with Sendai virus for 2 hours;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR301OGM_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Lymphatic | Unknown | ENCODE NAMALWA (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR301OGM] [Orig: Biosample_summary=NAMALWA treated with Sendai virus for 2 hours;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR301OGM_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001232 | ENCODE | Download | 814,465 | 246,179,214 | hotspots | hg38 | Osteoblast | Primary cell | CL:0000062 | Bone | ENCSR000ELJ | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed broadPeak | 12,643,415 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Osteoblast;Lab=Gregory Crawford, Duke;System=skeletal system;Submitted_track_name=ENCSR000ELJ_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Skeletal | Unknown | ENCODE Osteoblast (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELJ] [Orig: Biosample_summary=Osteoblast;Lab=Gregory Crawford, Duke;System=skeletal system;Submitted_track_name=ENCSR000ELJ_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001236 | ENCODE | Download | 90,358 | 24,140,339 | hotspots | hg19 | Epithelial cell | Primary cell | CL:0002304 | Eye | ENCSR000EOF | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,485,993 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000EOF_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Non-pigmented ciliary;premapping_cell_type=Non-pigmented ciliary epithelial cell | Sensory | Unknown | ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOF] [Orig: Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000EOF_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Non-pigmented ciliary;premapping_cell_type=Non-pigmented ciliary epithelial cell] [Life stage: Unknown] |
NGEN001252 | ENCODE | Download | 275,921 | 41,383,645 | peaks | hg38 | NCI-H226 | Cell line | EFO:0002285 | Lung | ENCSR265TEK | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,761,747 | 11/5/15 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=NCI-H226;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR265TEK_rep1_1_pe_bwa_biorep_filtered_peaks.bb | Respiratory | Unknown | ENCODE NCI-H226 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR265TEK] [Orig: Biosample_summary=NCI-H226;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR265TEK_rep1_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001260 | ENCODE | Download | 114,731 | 32,977,345 | hotspots | hg19 | Epithelial cell | Primary cell | CL:0002586 | Eye | ENCSR000EON | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 1,888,403 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EON_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Retinal pigment;premapping_cell_type=Retinal pigment epithelial cell | Sensory | Unknown | ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EON] [Orig: Biosample_summary=Retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EON_rep2_1_se_bwa_biorep_filtered_hotspots.bb;tissue_of_origin=Retinal pigment;premapping_cell_type=Retinal pigment epithelial cell] [Life stage: Unknown] |
NGEN001263 | ENCODE | Download | 191,944 | 28,784,161 | peaks | hg38 | H9 | Stem cell | EFO:0003045 | Stem Cell | ENCSR964WHY | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 1,924,665 | 8/1/16 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=H9, stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1b phase;Lab=John Stamatoyannopoulos, UW;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR964WHY_rep2_1_pe_bwa_biorep_filtered_peaks.bb | Stem Cell | Unknown | ENCODE H9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR964WHY] [Orig: Biosample_summary=H9, stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1b phase;Lab=John Stamatoyannopoulos, UW;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR964WHY_rep2_1_pe_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001271 | ENCODE | Download | 271,821 | 102,978,897 | hotspots | hg38 | Astrocyte | Primary cell | CL:0000127 | Brain | ENCSR000EPM | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 4,475,804 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Astrocyte;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPM_rep1_1_se_bwa_biorep_filtered_hotspots.bb | Nervous | Unknown | ENCODE Astrocyte (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPM] [Orig: Biosample_summary=Astrocyte;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPM_rep1_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001283 | ENCODE | Download | 223,125 | 107,828,466 | hotspots | hg38 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR391YAV | 1 | 1_1 | Not applicable | DNase-seq | bed broadPeak | 3,491,558 | 11/1/17 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Sigmoid colon tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR391YAV_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR391YAV] [Orig: Biosample_summary=Sigmoid colon tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR391YAV_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx] [Life stage: Adult] |
NGEN001284 | ENCODE | Download | 12,048 | 2,253,426 | hotspots | hg38 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000EKY | 1 | 1_1 ,1_2 | Not applicable | DNase-seq | bed broadPeak | 197,331 | 3/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=MCF-7 treated with 10 mM lactate for 24 hours;Lab=Gregory Crawford, Duke;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EKY_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKY] [Orig: Biosample_summary=MCF-7 treated with 10 mM lactate for 24 hours;Lab=Gregory Crawford, Duke;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EKY_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001286 | ENCODE | Download | 313,727 | 136,248,967 | hotspots | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000EKP | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed broadPeak | 4,968,980 | 8/28/12 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=K562 G2 phase;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKP_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb | Cardiovascular | Unknown | ENCODE K562 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKP] [Orig: Biosample_summary=K562 G2 phase;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKP_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001287 | ENCODE | Download | 332,264 | 49,782,344 | peaks | hg19 | LNCaP clone FGC | Cell line | EFO:0005726 | Male Reproductive | ENCSR000EKT | 1 | 1_1 ,1_2,1_3 | Not applicable | DNase-seq | bed narrowPeak | 3,195,848 | 4/19/11 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=LNCaP clone FGC;Lab=Gregory Crawford, Duke;System=reproductive system;Submitted_track_name=ENCSR000EKT_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb | Reproductive | Unknown | ENCODE LNCaP clone FGC (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EKT] [Orig: Biosample_summary=LNCaP clone FGC;Lab=Gregory Crawford, Duke;System=reproductive system;Submitted_track_name=ENCSR000EKT_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001300 | ENCODE | Download | 48,573 | 16,742,631 | hotspots | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR000EPT | 2 | 2_1 | Not applicable | DNase-seq | bed broadPeak | 798,544 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq hotspots | Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep2_1_se_bwa_biorep_filtered_hotspots.bb | Digestive | Unknown | ENCODE Panc1 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPT] [Orig: Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep2_1_se_bwa_biorep_filtered_hotspots.bb] [Life stage: Unknown] |
NGEN001303 | ENCODE | Download | 88,372 | 13,254,799 | peaks | hg19 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR000ENM | 2 | 2_1 | Not applicable | DNase-seq | bed narrowPeak | 884,336 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000ENM_rep2_1_se_bwa_biorep_filtered_peaks.bb | Digestive | Unknown | ENCODE HCT116 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENM] [Orig: Biosample_summary=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000ENM_rep2_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001313 | ENCODE | Download | 141,661 | 21,248,470 | peaks | hg19 | AG10803 | Cell line | NTR:0000481 | Skin | ENCSR000EMB | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 1,414,605 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMB_rep1_1_se_bwa_biorep_filtered_peaks.bb | Integumentary | Unknown | ENCODE AG10803 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMB] [Orig: Biosample_summary=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMB_rep1_1_se_bwa_biorep_filtered_peaks.bb] [Life stage: Unknown] |
NGEN001318 | ENCODE | Download | 295,657 | 44,341,664 | peaks | hg19 | Fibroblast | Primary cell | CL:0002553 | Lung | ENCSR000EOJ | 1 | 1_1 | Not applicable | DNase-seq | bed narrowPeak | 2,962,222 | 12/16/10 | 8/10/18 | Called peaks | DNase-seq peaks | Biosample_summary=Fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000EOJ_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of lung;old_tissue_category=Lung;tissue_of_origin=Lung;premapping_cell_type=Fibroblast - lung | Respiratory | Unknown | ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOJ] [Orig: Biosample_summary=Fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000EOJ_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of lung;old_tissue_category=Lung;tissue_of_origin=Lung;premapping_cell_type=Fibroblast - lung] [Life stage: Unknown] |
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